Mark J Novotny

Occupation: researcher

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Articles 36

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2008-06

Genomic sequencing of single microbial cells from environmental samples

Tanja Woyke, Ramunas Stepanauskas, Roger S Lasken, Mark J Novotny
2011-10

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

Ole Schulz-Trieglaff, Roger S Lasken, Hamidreza Chitsaz, Mark J Novotny, Pavel A. Pevzner
2011-05-24

Going deeper: metagenome of a hadopelagic microbial community

Shibu Yooseph, Roger S Lasken, Mark J Novotny, Eric E. Allen, Douglas H. Bartlett
2011-12-15

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

Craig Venter, Jeremy D. Selengut, Shibu Yooseph, Ruben E. Valas, Roger S Lasken, Mark J Novotny, Joyclyn Yee-Greenbaum, Mary-Jane Lombardo, Douglas B Rusch
2012-08-31

Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast

Craig Venter, Christian Tagwerker, Hamilton Smith, Clyde A Hutchison, Mark J Novotny, John I Glass, Cynthia Andrews-Pfannkoch, Gwynedd A Benders, Michael J. Montague, Ray-Yuan Chuang, Bogumil J Karas, Adi Ramon, Christopher D Dupont
2012-12-15

The green monster process for the generation of yeast strains carrying multiple gene deletions

Frederick P. Roth, Roger S Lasken, Mark J Novotny
2013-11-18

RNA-sequencing from single nuclei

Marcos J Araúzo-Bravo, Fred Gage, Roger S Lasken, Mark J Novotny
2013-06-10

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

Jeffrey S. McLean, Anna Edlund, Shibu Yooseph, Roger S Lasken, Hamidreza Chitsaz, Andrew E. Allen, Mark J Novotny, Pavel A. Pevzner
2013-03-14

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

Chien-Chi Lo, Patrick S Chain, Shannon L Johnson, Cliff Han, J Chris Detter, Olga Chertkov, Roger S Lasken, Ashlynn R. Daughton, Mark J Novotny, Karen W Davenport
2013-04-05

Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

Jeffrey S. McLean, Craig Venter, Roger S Lasken, Mark J Novotny, Pavel A. Pevzner, Joyclyn Yee-Greenbaum, Mary-Jane Lombardo
2015-07-21

Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis

Angeliki Tsangaratou, Sergei B Koralov, Lukas Chavez, Roger S Lasken, Anjana Rao, Mark J Novotny
2015-09-18

Single cells within the Puerto Rico trench suggest hadal adaptation of microbial lineages

Sergey Nikolenko, Roger S Lasken, Mark J Novotny, Pavel A. Pevzner, Douglas H. Bartlett
2016-04-19

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

Carolyn O'Connor, Jerika Barron, Baptiste N Jaeger, Jennifer Erwin, Fred Gage, Roger S Lasken, Apua C M Paquola, Mark J Novotny
2016-02-18

Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons

Jennifer Erwin, Fred Gage, Jeremy Miller, Ed S Lein, Rebecca D Hodge, Brian D Aevermann, Richard H. Scheuermann, Roger S Lasken, Mark J Novotny, Nicholas J. Schork
2016-09-12

L1-associated genomic regions are deleted in somatic cells of the healthy human brain

Jennifer Erwin, Anindita Sarkar, Fred Gage, Alysson Muotri, Roger S Lasken, Apua C M Paquola, Mark J Novotny
2016-06-14

Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation

Baptiste N Jaeger, Jerika Barron, Jennifer Erwin, Fred Gage, Roger S Lasken, Apua C M Paquola, Mark J Novotny
2017-01-01

PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX

Trygve E. Bakken, Rebecca D Hodge, Brian D Aevermann, Richard H. Scheuermann, Roger S Lasken, Jeremy Miller, Frank J Steemers, Mark J Novotny, Nicholas J. Schork
2017-06-22

The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1).

Roger S Lasken, Mark J Novotny, Logan M Peoples, Douglas H. Bartlett, Jennifer F. Biddle
2017-12-21

Cell type discovery and representation in the era of high-content single cell phenotyping

Trygve E. Bakken, Alexandra J Lee, Bali Pulendran, Jeremy Miller, Ed S Lein, Rebecca D Hodge, Brian D Aevermann, Richard H. Scheuermann, Roger S Lasken, Mark J Novotny, Nicholas J. Schork
2017-09-01

Corrigendum: L1-associated genomic regions are deleted in somatic cells of the healthy human brain

Anindita Sarkar, Fred Gage, Alysson Muotri, Roger S Lasken, Apua C M Paquola, Mark J Novotny
2017-03-17

Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation

Baptiste N Jaeger, Jerika Barron, Fred Gage, Roger S Lasken, Apua C M Paquola, Mark J Novotny
2018-05-01

Cell type discovery using single-cell transcriptomics: implications for ontological representation

Richard H. Scheuermann, Trygve E. Bakken, David Osumi-Sutherland, Alexander D Diehl, Jeremy Miller, Ed S Lein, Brian D Aevermann, Roger S Lasken, Mark J Novotny
2018-05-25

Contemporary circulating enterovirus D68 strains show differential viral entry and replication in human neuronal cells

David Michael Brown, Richard H. Scheuermann, Kenneth L. Tyler, Suman Ranjan Das, Mark J Novotny, Reed S Shabman
2018-10-16

Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells

Richard H. Scheuermann, Suman Ranjan Das, Mark J Novotny, Reed S Shabman
2018-08-27

Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type

Trygve E. Bakken, Francisco Diez-Fuertes, Gábor Molnár, Attila Ozsvár, Ed S Lein, Gábor Tamás, Jeremy Miller, Rebecca D Hodge, Brian D Aevermann, Richard H. Scheuermann, Roger S Lasken, Frank J Steemers, Mark J Novotny, Nóra Faragó, László G Puskás, Soraya I Shehata, Zoe Maltzer, Jennie L Close, Nicholas J. Schork
2018-07-01

Author Correction: L1-associated genomic regions are deleted in somatic cells of the healthy human brain

Anindita Sarkar, Fred Gage, Alysson Muotri, Roger S Lasken, Apua C M Paquola, Mark J Novotny
2018-08-01

Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development

Rajshekhar R Giraddi, Katherine E Varley, Roger S Lasken, Mark J Novotny, Charles M. Perou
2019-04-25

A niche-dependent myeloid transcriptome signature defines dormant myeloma cells

Guy Ledergor, Rachael L Terry, Kim De Veirman, Khatora S Opperman, Kate Vandyke, Anja Seckinger, Alexander P Corr, Tuan V Nguyen, Alexander Swarbrick, Belinda S. Parker, Tri Giang Phan, Peter I Croucher, Roger S Lasken, Amir Giladi, Mark J Novotny
2019-07-01

Erratum: Evolutionary dynamics and molecular epidemiology of West Nile virus in New York State: 1999-2015

Sean M Bialosuknia, Paolo Amedeo, Suman Ranjan Das, Laura D Kramer, Mark J Novotny
2020-03-03

Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

Rebecca D Hodge, Brian E Kalmbach, Trygve E. Bakken, Soraya I Shehata, Amy Bernard, Christof Koch, Richard H. Scheuermann, Ed S Lein, Jeremy Miller, Brian D Aevermann, Roger S Lasken, Frank J Steemers, Mark J Novotny, Eliza R Barkan, Anna Marie Yanny, Nicholas J. Schork
2020-09-29

Evaluation of signal detection algorithms within the Elanco Animal Health Pharmacovigilance database

Mark J Novotny
2020-10-27

Integrated Single-Cell Atlases Reveal an Oral SARS-CoV-2 Infection and Transmission Axis

Blake M Warner, Kevin M Byrd, Brian D Aevermann, Richard H. Scheuermann, Sarah Teichmann, Stephen M. Hewitt, David E. Kleiner, Stefania Pittaluga, Alison Grazioli, Adam Kimple, Mark J Novotny

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Mark J Novotny

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