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MUSCLE: multiple sequence alignment with high accuracy and high throughput

Published in: Nucleic Acids Research

Date of publication: 2004

Language: English

Main subject: sequence alignment

Bibliographic databases:

Cites articles 39

Date

Title

Authors

1984

The alignment of sets of sequences and the construction of phyletic trees: an integrated method
July 1987

The neighbor-joining method: a new method for reconstructing phylogenetic trees
1987

Progressive sequence alignment as a prerequisite to correct phylogenetic trees
November 1, 1994

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

,
1994

On the complexity of multiple sequence alignment
April 7, 1995

SCOP: a structural classification of proteins database for the investigation of sequences and structures

, ,
February 1995

Comprehensive study on iterative algorithms of multiple sequence alignment
July 1, 1995

Optimal protein structure alignments by multiple linkage clustering: application to distantly related proteins
December 13, 1996

Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments
August 1, 1996

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology.
September 1, 1997

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

,
May 1, 1998

SMART, a simple modular architecture research tool: identification of signaling domains

,
September 1998

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

,
January 1, 1998

Touring protein fold space with Dali/FSSP
January 1, 1998

Rose: generating sequence families
January 1, 1998

Phylogenetic inference in protein superfamilies: analysis of SH2 domains
July 1, 1999

A comprehensive comparison of multiple sequence alignment programs
January 1, 1999

CAFASP-1: critical assessment of fully automated structure prediction methods

,
January 1, 1999

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs
January 1, 1999

SMART: identification and annotation of domains from signalling and extracellular protein sequences

,
January 1, 2000

SMART: a web-based tool for the study of genetically mobile domains

,
September 1, 2000

T-Coffee: A novel method for fast and accurate multiple sequence alignment

,
January 1, 2000

The ASTRAL compendium for protein structure and sequence analysis
January 1, 2000

Structure comparison and structure patterns
July 1, 2000

Large-scale comparison of protein sequence alignment algorithms with structure alignments
July 15, 2001

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
January 1, 2001

BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations
July 1, 2002

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
January 2002

Recent progress in multiple sequence alignment: a survey
March 1, 2002

MaxBench: evaluation of sequence and structure comparison methods
January 1, 2002

Estimating amino acid substitution models: a comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method
April 2003

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

, , ,

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