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GapCoder automates the use of indel characters in phylogenetic analysis

Published in: BMC Bioinformatics

Date of publication: February 19, 2003

Language: English

Main subject: automation, phylogenetics, insertional mutagenesis, applied mathematics, biochemistry, structural biology

Bibliographic databases:

Cites articles 11

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The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment
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Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae).
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Gaps as characters in sequence-based phylogenetic analyses
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Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology
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Incorporation, relative homoplasy, and effect of gap characters in sequence-based phylogenetic analyses

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