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Effective energy function for proteins in solution

author

Martin Karplus

1930 -

published in: Proteins

date of publication: 1999-05-01

language: English

Cites articles 75

Date

Title

Authors

1998-12-01

Solution conformations and thermodynamics of structured peptides: molecular dynamics simulation with an implicit solvation model

Christian Bartels, Martin Karplus
1998-04-01

Protein Folding: A Perspective from Theory and Experiment.

Martin Karplus, Chris Dobson
1998-03-01

A metastable state in folding simulations of a protein model

Martin Karplus
1998-05-01

Urea effects on protein stability: hydrogen bonding and the hydrophobic effect
1997-12-01

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

Martin Karplus
1997-01-01

Additivity principles in biochemistry

Ken A. Dill
1996-04-09

Structural and energetic responses to cavity-creating mutations in hydrophobic cores: observation of a buried water molecule and the hydrophilic nature of such hydrophobic cavities
1996-01-01

Hydrated myoglobin's anharmonic fluctuations are not primarily due to dihedral transitions
1996-03-01

On the entropy of protein folding
1996-03

An Efficient Mean Solvation Force Model for Use in Molecular Dynamics Simulations of Proteins in Aqueous Solution

Franca Fraternali
1996-08

Simulation of activation free energies in molecular systems

Martin Karplus
1996-10-01

On the decomposition of free energies
1995-03-01

Demonstration of positionally disordered water within a protein hydrophobic cavity by NMR

Huan-Xiang Zhou, Angela Gronenborn, G. Marius Clore
1995-03-01

Molecular dynamics simulations of protein unfolding and limited refolding: characterization of partially unfolded states of ubiquitin in 60% methanol and in water
1995-11-01

Investigation of the solution structure of chymotrypsin inhibitor 2 using molecular dynamics: comparison to x-ray crystallographic and NMR data
1995-07-01

First-principles calculation of the folding free energy of a three-helix bundle protein
1995-10-01

Acid and thermal denaturation of barnase investigated by molecular dynamics simulations

Martin Karplus
1994-06-01

Kinetics versus thermodynamics in protein folding
1994-02-01

Do salt bridges stabilize proteins? A continuum electrostatic analysis

B Tidor
1994-03-01

Molecular dynamics simulation of protein denaturation: solvation of the hydrophobic cores and secondary structure of barnase

Martin Karplus
1994-07-01

Decomposition of the free energy of a system in terms of specific interactions. Implications for theoretical and experimental studies

Alan Mark
1994-05-01

The contribution of vibrational entropy to molecular association. The dimerization of insulin

B Tidor, Martin Karplus
1994-09-01

Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.

L. Mario Amzel
1993-07-01

Contribution of hydration to protein folding thermodynamics. II. The entropy and Gibbs energy of hydration
1993-07-01

Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration
1993-01-01

Gaussian neighborhood: a new measure of accessibility for residues of protein molecules.
1993-01-01

Structural and genetic analysis of protein stability
1993-12-01

Differential stability of beta-sheets and alpha-helices in beta-lactamase: a high temperature molecular dynamics study of unfolding intermediates
1993-06-01

Hydration of proteins. A comparison of experimental residence times of water molecules solvating the bovine pancreatic trypsin inhibitor with theoretical model calculations

Kurt Wüthrich
1993-06-01

Active site dynamics of acyl-chymotrypsin

Martin Karplus
1993-10-01

Protein hydration elucidated by molecular dynamics simulation
1993-06-01

Configurational distribution of denatured phosphoglycerate kinase

Jeremy C Smith

Article - wd:Q28142746

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