Ignacio Arganda-Carreras

1968 -

Languages spoken, written or signed: Spanish, Basque, English

Educated at: Autonomous University of Madrid

Occupation: researcher

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Articles 27

Date

Title

Authors

2004-01-01

Automatic registration of serial mammary gland sections

Ignacio Arganda-Carreras
2006

Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization

Ignacio Arganda-Carreras
2008-01-01

Elastic image registration of 2-D gels for differential and repeatability studies

Ignacio Arganda-Carreras, Carmen Pérez-García, Michael A. Unser, Philippe Thévenaz, Ana Beloso
2010-06-02

Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts

Johannes Schindelin, Albert Cardona, Stephan Saalfeld, Ignacio Arganda-Carreras
2010-12

BoneJ: Free and extensible bone image analysis in ImageJ

Ignacio Arganda-Carreras, Fabrice P Cordelières, Robert Dougherty, Michael Doube, John R. Hutchinson, Benjamin Schmid, Sandra J. Shefelbine
2010-10-01

3D reconstruction of histological sections: Application to mammary gland tissue

Ignacio Arganda-Carreras
2010-09-30

Non-rigid consistent registration of 2D image sequences

Ignacio Arganda-Carreras, Jan Kybic, Roberto Marabini, Carlos Ortiz de Solórzano
2012

TrakEM2 software for neural circuit reconstruction

Ignacio Arganda-Carreras, Johannes Schindelin, Albert Cardona, Pavel Tomancak, Stephan Saalfeld, Stephan Preibisch, Mark Longair
2012-06-28

Fiji: an open-source platform for biological-image analysis

Ignacio Arganda-Carreras, Kevin Eliceiri, Johannes Schindelin, Albert Cardona, Curtis Rueden, Pavel Tomancak, Verena Kaynig, Stephan Saalfeld, Stephan Preibisch, Jean-Yves Tinevez, Mark Longair
2012-01-15

Serial two-photon tomography for automated ex vivo mouse brain imaging

Yongsoo Kim, Ignacio Arganda-Carreras
2014-01-14

A generic classification-based method for segmentation of nuclei in 3D images of early embryos

Ignacio Arganda-Carreras, Thomas Boudier, Philippe Andrey
2014-04-09

Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling

Ignacio Arganda-Carreras, Uygar Sümbül, Yoshihiro Yoshihara, Sebastian Seung
2015-01-13

Mapping social behavior-induced brain activation at cellular resolution in the mouse

Ignacio Arganda-Carreras, Yongsoo Kim, Kathleen S Rockland, Michael Hawrylycz
2015-11-05

Crowdsourcing the creation of image segmentation algorithms for connectomics

Ignacio Arganda-Carreras, Johannes Schindelin, Albert Cardona, Alessandro Giusti, Jürgen Schmidhuber, Dan Claudiu Cireșan, Vaclav Uher, Changming Sun, Srinivas C Turaga, Daniel R. Berger, L.M. Gambardella, D. Laptev, S. Dwivedi, J.M. Buhmann, Ting Liu, M. Seyedhosseini, T. Tasdizen, L. Kamentsky, R. Burget, X. Tan, T.D. Pham, E. Bas, M.G. Uzunbas, Sebastian Seung H
2015-04-01

NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei

Ignacio Arganda-Carreras, Axel Poulet, David Legland, Aline V Probst, Christophe Tatout, Philippe Andrey
2015-01-22

Phenotyping nematode feeding sites: three-dimensional reconstruction and volumetric measurements of giant cells induced by root-knot nematodes in Arabidopsis

Javier Cabrera Chaves, Marta Barcala, Ignacio Arganda-Carreras, Carmen Fenoll, Carolina Escobar
2016-11-15

MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ

Ignacio Arganda-Carreras, David Legland, Philippe Andrey
2017-03-29

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification

Ignacio Arganda-Carreras, Johannes Schindelin, Verena Kaynig, Curtis Rueden, Kevin Eliceiri, Albert Cardona, Sebastian Seung H
2017-01-01

Designing Image Analysis Pipelines in Light Microscopy: A Rational Approach

Ignacio Arganda-Carreras, Philippe Andrey
2019-05-09

Publisher Correction: Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy

Solène Clavreul, Pierre Mahou, Ignacio Arganda-Carreras, Jeff W. Lichtman, Anatole Chessel, Alexis-Pierre Bemelmans, Karine Loulier, jean livet, Emmanuel Beaurepaire
2019-04-10

Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy

Katherine S Matho, Solène Clavreul, Pierre Mahou, Ignacio Arganda-Carreras, Jeff W. Lichtman, Anatole Chessel, Alexis-Pierre Bemelmans, Karine Loulier, Willy Supatto, jean livet, Emmanuel Beaurepaire
2019

Freeze-Frame Imaging of Synaptic Activity Using SynTagMA

Alberto Pérez-Álvarez, Christian Schulze, Brenna C Fearey, Benjamien Moeyaert, Ryan J. O’Toole, Manuel A Mohr, Ignacio Arganda-Carreras, Wei Yang, J. Simon Wiegert, Eric R Schreiter, Christine Elizabeth Gee, Michael B Hoppa, Thomas G. Oertner
2019-12-30

The human remains from Axlor (Dima, Biscay, northern Iberian Peninsula)

Asier Gómez-Olivencia, Diego López-Onaindia, Nohemi Sala, Antoine Balzeau, Ana Pantoja-Pérez, Ignacio Arganda-Carreras, Mikel Arlegi, Joseba Rios Garaizar, Aida Gómez-Robles
2020-04-07

ANHIR: Automatic Non-rigid Histological Image Registration Challenge

Ignacio Arganda-Carreras, Johannes Lotz, Spyridon Bakas, Marek Wodzinski, Sarthak Pati, Jan Kybic, Pekka Ruusuvuori, Jiří Borovec, Andrzej Skalski, Kimmo Kartasalo, Gloria Bueno
2020-09-29

MitoEM Dataset: Large-scale 3D Mitochondria Instance Segmentation from EM Images

Xueying Wang, Ignacio Arganda-Carreras
2023-08-15

3D Domain Adaptive Instance Segmentation via Cyclic Segmentation GANs

Ignacio Arganda-Carreras, Hanspeter Pfister
2024-05-17

Learning Gaze-aware Compositional GAN from Limited Annotations

Nerea Aranjuelo, Siyu Huang, Ignacio Arganda-Carreras, Luis Unzueta, Oihana Otaegui, Hanspeter Pfister, Donglai Wei

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Ignacio Arganda-Carreras

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