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Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

Author

David Baker

1962 -

Charles Kooperberg

Published in: Journal of Molecular Biology

Date of publication: April 1, 1997

Language: English

Main subject: simulated annealing

Bibliographic databases:

Cites articles 52

Date

Title

Authors

May 25, 1977

The Protein Data Bank: a computer-based archival file for macromolecular structures
April 1, 1980

On the prediction of protein structure: The significance of the root-mean-square deviation
April 28, 1981

Crystallographic refinement and atomic models of a human Fc fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9- and 2.8-A resolution
June 5, 1987

Structure of the C-terminal domain of the ribosomal protein L7/L12 from Escherichia coli at 1.7 A
January 5, 1989

Structure of phage 434 Cro protein at 2.35 A resolution
January 1, 1989

A computer model to dynamically simulate protein folding: studies with crambin.
January 5, 1989

Structure of the amino-terminal domain of phage 434 repressor at 2.0 A resolution
January 1, 1990

Identification of protein folds: matching hydrophobicity patterns of sequence sets with solvent accessibility patterns of known structures
June 1, 1990

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins
November 2, 1990

Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions
1991

Database of homology-derived protein structures and the structural meaning of sequence alignment
July 12, 1991

A method to identify protein sequences that fold into a known three-dimensional structure,A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure
July 1, 1991

Accurate bond and angle parameters for X-ray protein structure refinement
August 9, 1991

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G
October 1, 1991

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
July 2, 1992

A new approach to protein fold recognition

,
February 1, 1992

Proline cis-trans isomers in calbindin D9k observed by X-ray crystallography
March 1, 1992

Selection of representative protein data sets
November 15, 1992

Amino acid substitution matrices from protein blocks
April 1, 1993

PROCHECK: a program to check the stereochemical quality of protein structures

,
August 1, 1993

Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures
August 1, 1993

Protein secondary structure prediction using nearest-neighbor methods
May 1, 1994

An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function
April 1, 1994

Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin
February 1, 1994

Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches
May 1, 1994

An algorithm to generate low-resolution protein tertiary structures from knowledge of secondary structure
August 1, 1994

Comparison of systematic search and database methods for constructing segments of protein structure
March 1, 1994

An improved pair potential to recognize native protein folds
August 1, 1995

Recurring local sequence motifs in proteins
September 1, 1995

Local moves: an efficient algorithm for simulation of protein folding
November 1, 1995

Progress in fold recognition
June 1, 1995

LINUS: a hierarchic procedure to predict the fold of a protein

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