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The developmental transcriptome of Drosophila melanogaster

pengarang

Steven E. Brenner

diterbitkan dalam: Nature

tanggal publikasi: 2011-03-24

bahasa: Inggris

subyek utama: Drosophila melanogaster, Transkriptomika

Cites articles 48

Date

Judul

Pengarang

2010-05

Most "dark matter" transcripts are associated with known genes

Corey Nislow, Harm van Bakel, Benjamin J. Blencowe
2010-05

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Steven Salzberg, Lior Pachter, Cole Trapnell, Barbara J. Wold
2010-12-22

The transcriptional diversity of 25 Drosophila cell lines

Thomas R. Gingeras, Anastasia A. Samsonova, Brenton R. Graveley, Norbert Perrimon, Susan E. Celniker, Alexander Dobin
2010-12-22

Genome-wide analysis of promoter architecture in Drosophila melanogaster

Timo Lassmann, Hazuki Takahashi, Brenton R. Graveley, Piero Carninci, Susan E. Celniker
2010-10-04

Conservation of an RNA regulatory map between Drosophila and mammals

Kasper D. Hansen, Steven E. Brenner, Brenton R. Graveley, Sandrine Dudoit
2010-07-01

Modulation of the frequency response of Shaker potassium channels by the quiver peptide suggesting a novel extracellular interaction mechanism

Jing Wang
2010-12-24

Identification of functional elements and regulatory circuits by Drosophila modENCODE

Lincoln Stein, Steven E. Brenner
2010-12-24

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

Suzanna Lewis, Julie Ahringer, Paulina Kolasinska-Zwierz, Nikolaus Rajewsky, Paul Lloyd, Isabel Latorre, Reto Gassmann, Marco Mangone, Sheldon McKay, Tao Liu, Angie S. Hinrichs, Gos Micklem, Andrea Sboner, Kim Rutherford, Georg Zeller, Abby Dernburg, Eran Segal, Joel Rozowsky, Frank J. Slack, Gunnar Rätsch, Roger P Alexander, Andreas Rechtsteiner, Eric C Lai, Hiram Clawson, Sebastian D Mackowiak, Yaniv Lubling, Vishal Khivansara, Lincoln Stein, Mark Bender Gerstein, Valerie Reinke, Michael J MacCoss, Susan Strome, Rachel Lyne, Michael P. Snyder, Jim Kent, Jason D Lieb, Ellen T. Kephart, Ladeana Hillier, Bob Waterston, Galt Barber, David M. Miller III, Jiang He, Ekta Khurana, Lucas Lochovsky
2009-04-10

A conserved WD40 protein binds the Cajal body localization signal of scaRNP particles

Joan A. Steitz, Kazimierz T Tycowski, Mei-Di Shu
2009-11-06

Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila

Margaret C Ho, Susan E. Celniker
2009-06-01

Unlocking the secrets of the genome

Gos Micklem, Eric C Lai, Manolis Kellis, Lincoln Stein, Mark Bender Gerstein, Susan E. Celniker, Michael P. Snyder, Jason D Lieb, Steven Russell, Gary H. Karpen
2008-12

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
2008-11-01

Alternative isoform regulation in human tissue transcriptomes

Rickard Sandberg, Stephen F Kingsmore
2008-01-01

Sex-determining mechanisms in insects
2008-06-20

A novel ecdysone receptor mediates steroid-regulated developmental events during the mid-third instar of Drosophila
2008-01-01

MicroRNAs in the Drosophila bithorax complex
2007-11-08

Evolution of genes and genomes on the Drosophila phylogeny

Craig Venter, Richard K. Wilson, Russell Schwartz, James A. Yorke, Jun Wang, Kerstin Lindblad-Toh, Temple F. Smith, Eugene Myers, Eric Lander, Manolis Kellis, Hadi Quesneville, Sam Griffiths-Jones, Jennifer Daub, Nicole Stange-Thomann, Sante Gnerre, Lucinda Fulton, Marcia Lara, Sarah Teichmann, Gane Ka-Shu Wong, Patrick Minx, Serafim Batzoglou, Graziano Pesole, Chris Ponting, Karsten Kristiansen, Jennifer Baldwin, Jerome Naylor, Jonathan Butler, Evan Mauceli, Robert Nicol, Manfred Grabherr, James Meldrim, Alville Collymore, Edward Grandbois, Tina Goode, Alicia Franke, Georgia Giannoukos, Boris Boukhgalter, Kunsang Gyaltsen, Kimberly Dooley, Birhane Hagos, Tracey Honan, Gary Gearin, Asha Kamat, Leanne Hughes, Ben Kanga, Krista Lance, Niall Lennon, Norbu Dhargay, Mieke Citroen, Anna Montmayeur, William McCusker, Vasilia Magnisalis, Eva Markiewicz, Katie D'Aco, Jill Falk, Marta Puig, Barbara Negre, Valer Gotea, Filipe G. Vieira, Stephen W. Schaeffer, Charles Robin, Jakob Skou Pedersen, Robert K. Bradley, Boris Adryan, Ian Holmes, Kevin McKernan, Kristipati Ravi Ram, Julio Rozas, Angie S. Hinrichs, Carmen Segarra, Wilfried Haerty, Michael G. Ritchie, Andreas Heger, Alexander Stark, Dan Hultmark, Mihai Pop, Rasmus Nielsen, Sudhir Kumar, Lior Pachter, Robert A. Good, Kristi Montooth, Kevin A. Edwards, Marina Sirota, Todd A Schlenke, David Sturgill, Chiao-Feng Lin, Claudia Rohde, Saverio Vicario, Antonio Bernardo Carvalho, Wojciech Makalowski, Adam Phillippy, Michael Eisen, Shiaw-Pyng Yang, Kim Delehaunty, Leopold Parts, Mariana Wolfner, Timothy B Sackton, Roderic Guigó i Serra, Luciano M. Matzkin, Roberta Kwok, Susan E. Celniker, Kim D. Pruitt, Andrew G. Clark, Aleksey V. Zimin, Ladeana Hillier, Asif T. Chinwalla, Evgeny M. Zdobnov, Matthew W Hahn, Tashi Lokyitsang, Pouya Kheradpour, Casey M Bergman, Therese Ann Markow, Amanda M Larracuente, Sandra W. Clifton, Daniel L Halligan, Gary H. Karpen, Jeffrey R Powell, Brian R Calvi, Iain Maccallum, Ruiqiang Li, Albert J. Vilella, Matthew D. Rasmussen, Toby Bloom, Thomas C Kaufman, Anat Caspi, Leonardo B Koerich, Steven Salzberg, Granger G Sutton, Rod A. Wing, Nicholas B. Sisneros, Rosie Levine, Marc J. Rubenfield, Ewen F. Kirkness, Manyuan Long, Meizhong Luo, Karin A. Remington, Yu-Hui C Rogers, Michael Schatz, John Spieth, Robert L. Strausberg, Eli Venter, Teena Mehta, Arthur L. Delcher, Jeong-Ok Lee, Jerry Coyne
2007-06-01

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Ewan Birney, Alfonso Valencia, Tim Hubbard, Xavier Estivill i Pallejà, Paul Flicek, Peter F. Stadler, Ian Dunham, Jakob Skou Pedersen, Stilianos Antonarakis, Adam C. Siepel, Núria López-Bigas, Barbara E. Stranger, Julian Huppert, Gonçalo Abecasis, Francis Collins, Jun Liu, Albin Sandelin, Alexander W Bruce, Matthew J. Oberley, Anason Halees, Ola Wallerman, Sylvain Foissac, Ari Löytynoja, Tyler Alioto, Tae Hoon Kim, Alvaro Rada-Iglesias, Adam Ameur, Jana Hertel, Josep F. Abril, Christine P Bird, Jörg Hackermüller, Andrea Tanzer, Ian Holmes, Richard Sandstrom, Jan Korbel, Angie S. Hinrichs, Stefan Enroth, Christoph Flamm, David Vetrie, Deyou Zheng, Eduardo Eyras, Joel Rozowsky, Sean Davis, Anindya Dutta, Nick Goldman, Thomas D. Tullius, Ross Hardison, Peter Newburger, Ivo L. Hofacker, Thomas R. Gingeras, Peggy Farnham, John S. Mattick, Michele Clamp, Donna Karolchik, Kerstin Lindblad-Toh, Damian Keefe, David Haussler, Heather Trumbower, Tim Massingham, Sante Gnerre, Abel Ureta-Vidal, Galt Barber, Catherine Ucla, Erica Sodergren, Jennifer Harrow, Roderic Guigó i Serra, Julien Lagarde, Tina Graves, Eric Lander, George Weinstock, France Denoeud, Lior Pachter, Webb Miller, Elaine Mardis, Piero Carninci, Mark Bender Gerstein, James Cuff, Richard M. Myers, Juan I. Montoya-Burgos, Alexandre Reymond, Baoli Zhu, Akshay A Bhinge, Adam Frankish, John Stamatoyannopoulos, Gregory E. Crawford, Benedict Paten, Hiram Clawson, Yoshihide Hayashizaki, Ankit Malhotra, Robert Baertsch, NISC Comparative Sequencing Program, Eric D. Green, James C Mullikin, Ann S Zweig, Deanna M. Church, Kate R. Rosenbloom, Michael P. Snyder, Colin N Dewey, Jim Kent, Jason D Lieb, Vishwanath R Iyer, James Taylor, Donna Muzny, Serafim Batzoglou, Job Dekker, Michael Hawrylycz, Peter Good, Elise A Feingold, Michael L Tress, Emmanouil Dermitzakis, James Gilbert, Richard K. Wilson, Carine Wyss, Jorg Drenkow, Michael R Kuehn, Shane Neph, Michael O Dorschner, Andrew Haydock, Fidencio Neri, Anthony Shafer, Shamil R Sunyaev, Robert Castelo, Sujit Dike, Manja Lindemeyer, David Swarbreck, Siew Woh Choo, Caroline Manzano, Charlotte N Henrichsen, Ugrappa Nagalakshmi, Kris A Wetterstrand, Sergey Nikolaev, Fabio Pardi, Ghia Euskirchen, Kim C Worley, Huaiyang Jiang, Maxim Koriabine, Mikhail Nefedov, Kazutoyo Osoegawa, ENCODE Project Consortium, Jacqueline Chrast, Matthew T Weirauch, George Asimenos, Gerard G Bouffard, Xiaobin Guan, Jacquelyn R Idol, Valerie V B Maduro, Baishali Maskeri, Robert W. Blakesley, Richard A Gibbs, David A. Wheeler, Mark S. Guyer, Nigel Carter, Robert M. Kuhn, Rachel A. Harte, Claes Wadelius, Chikatoshi Kai, Todd Richmond, Kristin Missal, Stefan Washietl
2007-01

Illuminating the silence: understanding the structure and function of small RNAs
2007-11-01

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

Alexander Stark, Jakob Skou Pedersen, Angie S. Hinrichs, Michael Eisen, David Haussler, Michael Weir, Julius Brennecke, Stein Aerts, Jacques van Helden, Bassem Hassan, Lior Pachter, Eric C Lai, Manolis Kellis, Benedict Paten, Leopold Parts, David P. Bartel, Gregory Hannon, Susan E. Celniker, Colin N Dewey, Jim Kent, Matthew W Hahn, Pouya Kheradpour, Emily C. Hodges, Andrew G. Clark, Matthew D. Rasmussen, Thomas C Kaufman, Anat Caspi, Sushmita Roy
2007-01-01

Genetic approaches to studying adenosine-to-inosine RNA editing

James E C Jepson
2006-08-01

A family of conserved noncoding elements derived from an ancient transposable element

Eric Lander, Michael Kamal, Xiaohui Xie
2006-04-16

A distal enhancer and an ultraconserved exon are derived from a novel retroposon

Nadav Ahituv, Adam C. Siepel, Gill Bejerano, Jim Kent
2006-10-03

RNA editing in Drosophila melanogaster: New targets and functional consequences

Susan E. Celniker
2006-09-01

Learning the common language of genetics
2006-02-01

Discrete pulses of molting hormone, 20-hydroxyecdysone, during late larval development of Drosophila melanogaster: correlations with changes in gene activity

Michael B O'Connor
2006-09-03

Biological function of unannotated transcription during the early development of Drosophila melanogaster.

Thomas R. Gingeras
2004

A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults
2004-11-03

A computational and experimental approach toward a priori identification of alternatively spliced exons
2004-10-01

A gene expression map for the euchromatic genome of Drosophila melanogaster.

Scott A Rifkin, Christopher E. Mason
2003-12-22

An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome

Stefan Haas, Michael Boutros
2003-08-08

Nervous system targets of RNA editing identified by comparative genomics

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