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Protein interaction verification and functional annotation by integrated analysis of genome-scale data.

author

Alvis Brazma

2000 -

Patrick Kemmeren

Jaak Vilo

1966 -

published in: Molecular Cell

date of publication: 2002-05-01

Cites articles 47

Date

Title

Authors

2002-01-10

Functional organization of the yeast proteome by systematic analysis of protein complexes

Peer Bork, Gerard Drewes, Giulio Superti-Furga, Anne-Claude Gavin, Gitte Neubauer, Anne-Marie Michon, Malgorzata Schelder, Angela Bauch, Paola Grandi, Roland Krause, Bernhard Kuster, Bertrand Séraphin, Jörg Schultz, Sonja Bastuck, Manfred Raida, Tewis Bouwmeester, Jens Rick, Heinz Ruffner, Bettina Huhse, Martina Marzioch, Marita Remor, Miro Brajenovic, Karin Klein, Manuela Hudak, Marie-Anne Heurtier, Angela Edelmann, Andreas Bauer
2002-01-10

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

Daniel Durocher, Marilyn Goudreault, Anthony Pawson, Katerina Michalickova, Cheryl Wolting, Gary D. Bader, Keiryn L Bennett
2002-01-01

Relating whole-genome expression data with protein-protein interactions

Mark Bender Gerstein, Dov Greenbaum
2001-01-01

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

Richard M. Durbin, Ewan Birney, Rolf Apweiler, Jérôme Gouzy, Amos Bairoch, Terri Attwood, Marco Pagni, Henning Hermjakob, Inge Jonassen, Alexander Kanapin, Rodrigo López, Nicola Mulder, Alex Bateman, Florence Servant
2001-06-01

Whole-genome analysis: annotations and updates

Mihaela Zavolan
2001-12

Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
2001-09-01

A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae
2001-05-01

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

Roger E Bumgarner
2001-03-13

A comprehensive two-hybrid analysis to explore the yeast protein interactome

Takashi Ito
2001-06

Computational analysis of microarray data

John Quackenbush
2001-03

Large-scale analysis of the yeast proteome by multidimensional protein identification technology
2000-08-01

Gene expression data analysis

Alvis Brazma
2000-01-01

Genomic biology
2000-11-01

Metabolite profiling for plant functional genomics

Oliver Fiehn, Lothar Willmitzer, Joachim Kopka
2000-12

Genomic expression programs in the response of yeast cells to environmental changes

Michael B. Eisen, Patrick O. Brown, David Botstein, Paul Spellman
2000-07-07

Functional discovery via a compendium of expression profiles

Stephen Friend
2000-08-01

Predicting protein function by genomic context: quantitative evaluation and qualitative inferences

Peer Bork, Berend Snel
2000-01-01

Transcription of eukaryotic protein-coding genes

Richard A. Young
2000-06-01

Genomics, gene expression and DNA arrays
2000-01-01

MIPS: a database for genomes and protein sequences
2000-12-01

Genome-wide location and function of DNA binding proteins

Oscar M. Aparicio, Itamar Simon, Stephen P. Bell, Richard A. Young
2000-02-04

Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles

Stephen Friend
2000-04-28

Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation
2000-02-10

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

Gerard Cagney, Mark Johnston, Peter Uetz, Theodore S Kalbfleisch
2000-07-01

Biomedical discovery with DNA arrays
1999-01

Exploring the new world of the genome with DNA microarrays

David Botstein, Patrick O. Brown
1999-11-01

Protein interaction maps for complete genomes based on gene fusion events

Anton J. Enright
1999-01-01

The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data
1999-11-01

A combined algorithm for genome-wide prediction of protein function

Edward Marcotte, Matteo Pellegrini, Todd O. Yeates
1999-11-01

A biochemical genomics approach for identifying genes by the activity of their products

Elizabeth J. Grayhack
1999-11-25

Large-scale analysis of the yeast genome by transposon tagging and gene disruption

Mark Bender Gerstein
1999-08-06

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

Erik Gentalen, Robert Wysocki, Mark Johnston, José L. Revuelta, Stephen Friend

Article - wd:Q30696445

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