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Cites articles 126

Date

Title

Authors

2007-11-01

An evolutionarily conserved domain of roX2 RNA is sufficient for induction of H4-Lys16 acetylation on the Drosophila X chromosome
2007-11-01

Phylogenetic footprinting analysis in the upstream regulatory regions of the Drosophila enhancer of split genes
2007-11

Gene family evolution across 12 Drosophila genomes

Matthew W Hahn
2007-11-08

Evolution of genes and genomes on the Drosophila phylogeny

Craig Venter, Richard K. Wilson, Russell Schwartz, James A. Yorke, Jun Wang, Kerstin Lindblad-Toh, Temple F. Smith, Eugene Myers, Eric Lander, Manolis Kellis, Hadi Quesneville, Sam Griffiths-Jones, Jennifer Daub, Nicole Stange-Thomann, Sante Gnerre, Lucinda Fulton, Marcia Lara, Sarah Teichmann, Gane Ka-Shu Wong, Patrick Minx, Serafim Batzoglou, Graziano Pesole, Chris Ponting, Karsten Kristiansen, Jennifer Baldwin, Jerome Naylor, Jonathan Butler, Evan Mauceli, Robert Nicol, Manfred Grabherr, James Meldrim, Alville Collymore, Edward Grandbois, Tina Goode, Alicia Franke, Georgia Giannoukos, Boris Boukhgalter, Kunsang Gyaltsen, Kimberly Dooley, Birhane Hagos, Tracey Honan, Gary Gearin, Asha Kamat, Leanne Hughes, Ben Kanga, Krista Lance, Niall Lennon, Norbu Dhargay, Mieke Citroen, Anna Montmayeur, William McCusker, Vasilia Magnisalis, Eva Markiewicz, Katie D'Aco, Jill Falk, Marta Puig, Barbara Negre, Valer Gotea, Filipe G. Vieira, Stephen W. Schaeffer, Charles Robin, Jakob Skou Pedersen, Robert K. Bradley, Boris Adryan, Ian Holmes, Kevin McKernan, Kristipati Ravi Ram, Julio Rozas, Angie S. Hinrichs, Carmen Segarra, Wilfried Haerty, Michael G. Ritchie, Andreas Heger, Alexander Stark, Dan Hultmark, Mihai Pop, Rasmus Nielsen, Sudhir Kumar, Lior Pachter, Robert A. Good, Kristi Montooth, Kevin A. Edwards, Marina Sirota, Todd A Schlenke, David Sturgill, Chiao-Feng Lin, Claudia Rohde, Saverio Vicario, Antonio Bernardo Carvalho, Wojciech Makalowski, Adam Phillippy, Michael B. Eisen, Shiaw-Pyng Yang, Kim Delehaunty, Leopold Parts, Mariana Wolfner, Timothy B Sackton, Roderic Guigó i Serra, Luciano M. Matzkin, Roberta Kwok, Susan E. Celniker, Kim D. Pruitt, Andrew G. Clark, Aleksey V. Zimin, Ladeana Hillier, Asif T. Chinwalla, Evgeny M. Zdobnov, Matthew W Hahn, Tashi Lokyitsang, Pouya Kheradpour, Casey M Bergman, Therese Ann Markow, Amanda M Larracuente, Sandra W. Clifton, Daniel L Halligan, Gary H. Karpen, Jeffrey R Powell, Brian R Calvi, Iain Maccallum, Ruiqiang Li, Albert J. Vilella, Matthew D. Rasmussen, Toby Bloom, Thomas C Kaufman, Anat Caspi, Leonardo B Koerich, Steven Salzberg, Granger G Sutton, Rod A. Wing, Nicholas B. Sisneros, Rosie Levine, Marc J. Rubenfield, Ewen F. Kirkness, Manyuan Long, Meizhong Luo, Karin A. Remington, Yu-Hui C Rogers, Michael Schatz, John Spieth, Robert L. Strausberg, Eli Venter, Teena Mehta, Arthur L. Delcher, Jeong-Ok Lee, Jerry Coyne
2007-12

Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes

Manolis Kellis, Emily C. Hodges, Julius Brennecke, Alexander Stark, Leopold Parts, Gregory Hannon, Pouya Kheradpour
2007-12

Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs

Manolis Kellis, Alexander Stark, Eric C Lai, David P. Bartel
2007-11-07

Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes

Manolis Kellis, Susan E. Celniker
2007-11-07

Reliable prediction of regulator targets using 12 Drosophila genomes

Alexander Stark, Manolis Kellis, Pouya Kheradpour, Sushmita Roy
2007-11-07

Fine-tuning enhancer models to predict transcriptional targets across multiple genomes

Bassem Hassan, Jacques van Helden, Stein Aerts
2007-07-01

A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila

Africa Couto, Barry Dickson
2007-07-06

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

David P. Bartel
2007-06-28

The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila

Eric C Lai
2007-07-05

Intronic microRNA precursors that bypass Drosha processing

David P. Bartel
2007-06-01

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Ewan Birney, Alfonso Valencia, Tim Hubbard, Xavier Estivill i Pallejà, Paul Flicek, Peter F. Stadler, Ian Dunham, Jakob Skou Pedersen, Stilianos Antonarakis, Adam C. Siepel, Núria López-Bigas, Barbara E. Stranger, Julian Huppert, Gonçalo Abecasis, Francis Collins, Jun Liu, Albin Sandelin, Alexander W Bruce, Matthew J. Oberley, Anason Halees, Ola Wallerman, Sylvain Foissac, Ari Löytynoja, Tyler Alioto, Tae Hoon Kim, Alvaro Rada-Iglesias, Adam Ameur, Jana Hertel, Josep F. Abril, Christine P Bird, Jörg Hackermüller, Andrea Tanzer, Ian Holmes, Richard Sandstrom, Jan Korbel, Angie S. Hinrichs, Stefan Enroth, Christoph Flamm, David Vetrie, Deyou Zheng, Eduardo Eyras, Joel Rozowsky, Sean Davis, Anindya Dutta, Nick Goldman, Thomas D. Tullius, Ross Hardison, Peter Newburger, Ivo L. Hofacker, Thomas R. Gingeras, Peggy Farnham, John S. Mattick, Michele Clamp, Donna Karolchik, Kerstin Lindblad-Toh, Damian Keefe, David Haussler, Heather Trumbower, Tim Massingham, Sante Gnerre, Abel Ureta-Vidal, Galt Barber, Catherine Ucla, Erica Sodergren, Jennifer Harrow, Roderic Guigó i Serra, Julien Lagarde, Tina Graves, Eric Lander, George Weinstock, France Denoeud, Lior Pachter, Webb Miller, Elaine Mardis, Piero Carninci, Mark Bender Gerstein, James Cuff, Richard M. Myers, Juan I. Montoya-Burgos, Alexandre Reymond, Baoli Zhu, Akshay A Bhinge, Adam Frankish, John Stamatoyannopoulos, Gregory E. Crawford, Benedict Paten, Hiram Clawson, Yoshihide Hayashizaki, Ankit Malhotra, Robert Baertsch, NISC Comparative Sequencing Program, Eric D. Green, James C Mullikin, Ann S Zweig, Deanna M. Church, Kate R. Rosenbloom, Michael P. Snyder, Colin N Dewey, Jim Kent, Jason D Lieb, Vishwanath R Iyer, James Taylor, Donna Muzny, Serafim Batzoglou, Job Dekker, Michael Hawrylycz, Peter Good, Elise A Feingold, Michael L Tress, Emmanouil Dermitzakis, James Gilbert, Richard K. Wilson, Carine Wyss, Jorg Drenkow, Michael R Kuehn, Shane Neph, Michael O Dorschner, Andrew Haydock, Fidencio Neri, Anthony Shafer, Shamil R Sunyaev, Robert Castelo, Sujit Dike, Manja Lindemeyer, David Swarbreck, Siew Woh Choo, Caroline Manzano, Charlotte N Henrichsen, Ugrappa Nagalakshmi, Kris A Wetterstrand, Sergey Nikolaev, Fabio Pardi, Ghia Euskirchen, Kim C Worley, Huaiyang Jiang, Maxim Koriabine, Mikhail Nefedov, Kazutoyo Osoegawa, ENCODE Project Consortium, Jacqueline Chrast, Matthew T Weirauch, George Asimenos, Gerard G Bouffard, Xiaobin Guan, Jacquelyn R Idol, Valerie V B Maduro, Baishali Maskeri, Robert W. Blakesley, Richard A Gibbs, David A. Wheeler, Mark S. Guyer, Nigel Carter, Robert M. Kuhn, Rachel A. Harte, Claes Wadelius, Chikatoshi Kai, Todd Richmond, Kristin Missal, Stefan Washietl
2007-05-21

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

Duncan Odom, Ernest Fraenkel, Robin Dowell
2007-04-16

Escherichia coli ribosomal protein L20 binds as a single monomer to its own mRNA bearing two potential binding sites

Catherine A. Royer
2007-02-01

A core transcriptional network for early mesoderm development in Drosophila melanogaster

Charles Girardot, Marc Brehme, Eileen E. M. Furlong
2007-02-01

Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo

Alexander Stark, Manolis Kellis, Robert P Zinzen, Julia Zeitlinger, Richard A. Young
2006-01-01

High-throughput plasmid cDNA library screening

Robert Svirskas, Susan E. Celniker
2006-12-21

Regulated translational bypass of stop codons in yeast

Tobias von der Haar, Mick F. Tuite
2006-12-15

Tcl1 expression in chronic lymphocytic leukemia is regulated by miR-29 and miR-181

Amelia Cimmino, John P. Hagan, Stefano Volinia, Carlo Maria Croce, George A. Calin
2006-11-30

P[acman]: a BAC transgenic platform for targeted insertion of large DNA fragments in D. melanogaster

Koen Venken, Hugo J. Bellen
2006-11-11

FlyBase: genomes by the dozen
2006-06

A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

Lars Juhl Jensen, Peer Bork, Eileen E. M. Furlong, Janus Schou Jakobsen
2006-06

microRNA target predictions in animals
2006-06-01

Approaches to microRNA discovery

Eugène Berezikov, Edwin Cuppen
2006-05

Expression-guided in silico evaluation of candidate cis regulatory codes for Drosophila muscle founder cells

Stephen S. Gisselbrecht, Martha L Bulyk
2006-04-21

Control of developmental regulators by Polycomb in human embryonic stem cells

Rudolf Jaenisch, Duncan Odom, Richard A. Young, Douglas A. Melton, Haruhiko Koseki, Richard G. Jenner, Stuart S Levine, George W Bell, David P. Bartel, Laurie A. Boyer, Brett Chevalier, Nancy M Hannett, Tong Ihn Lee, Matthew G Guenther, Heather Murray, Bingbing Yuan, Arie P Otte, Thomas Volkert
2006-04

Identification and classification of conserved RNA secondary structures in the human genome

Jim Kent, David Haussler, Webb Miller, Kerstin Lindblad-Toh, Eric Lander, Adam C. Siepel, Jakob Skou Pedersen, Kate R. Rosenbloom, Gill Bejerano
2006-03-13

Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster

André P. Gerber, Patrick O. Brown
2006-02-24

Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons

Eric D. Green
2006-01-01

snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs

Article - wd:Q34712340

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