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A survey of current software for haplotype phase inference

Published in: Human genomics

Date of publication: January 1, 2004

Main subject: software

Bibliographic databases:

Cites articles 31

Date

Title

Authors

March 1, 1990

Inference of haplotypes from PCR-amplified samples of diploid populations
September 1995

Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
September 1, 1995

HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes
August 22, 2000

Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data
March 1, 2000

Model-free analysis and permutation tests for allelic associations
November 26, 2001

Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
October 1, 2001

Bayesian analysis of haplotypes for linkage disequilibrium mapping
March 9, 2001

A new statistical method for haplotype reconstruction from population data
April 1, 2001

Haplotyping and estimation of haplotype frequencies for closely linked biallelic multilocus genetic phenotypes including nuclear family information
December 1, 2002

HapScope: a software system for automated and visual analysis of functionally annotated haplotypes

,
October 17, 2002

Haplotype inference in random population samples

,
December 1, 2002

GENECOUNTING: haplotype analysis with missing genotypes
November 1, 2002

Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms
November 1, 2002

Relative efficiency of ambiguous vs. directly measured haplotype frequencies
January 1, 2002

Efficiency of haplotype frequency estimation when nuclear family information is included
December 1, 2003

Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
October 20, 2003

A comparison of bayesian methods for haplotype reconstruction from population genotype data
October 1, 2003

Estimating haplotype frequencies and standard errors for multiple single nucleotide polymorphisms
October 1, 2003

GCHap: fast MLEs for haplotype frequencies by gene counting
September 1, 2003

Haplotype information and linkage disequilibrium mapping for single nucleotide polymorphisms
July 29, 2003

Selection and evaluation of tagging SNPs in the neuronal-sodium-channel gene SCN1A: implications for linkage-disequilibrium gene mapping

,
July 1, 2003

Nonparametric disequilibrium mapping of functional sites using haplotypes of multiple tightly linked single-nucleotide polymorphism markers
May 30, 2003

Efficiency of single-nucleotide polymorphism haplotype estimation from pooled DNA.

,
January 17, 2003

Estimation of haplotype frequencies, linkage-disequilibrium measures, and combination of haplotype copies in each pool by use of pooled DNA data
January 15, 2003

Optimal step length EM algorithm (OSLEM) for the estimation of haplotype frequency and its application in lipoprotein lipase genotyping
November 1, 2003

Gametic phase estimation over large genomic regions using an adaptive window approach

,
September 1, 2003

Haplotype inference by maximum parsimony
September 1, 2003

Linkage disequilibrium assessment via log-linear modeling of SNP haplotype frequencies
September 1, 2003

Pedigree disequilibrium tests for multilocus haplotypes
January 1, 2003

On the use of DNA pooling to estimate haplotype frequencies
January 1, 2004

A Markov chain approach to reconstruction of long haplotypes

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