Zasha Weinberg

2000 -

utbildad vid: University of Washington

sysselsättning: forskare, datavetare

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Artiklar 32

Datum

Titel

Författare

2021-02-23

Biochemical analysis of cleavage and ligation activities of the pistol ribozyme from <i>Paenibacillus polymyxa</i>

Zasha Weinberg
2020-05-24

Discovery of 20 novel ribosomal leader candidates in bacteria and archaea

Zasha Weinberg
2020-08-25

A rare bacterial RNA motif is implicated in the regulation of the purF gene whose encoded enzyme synthesizes phosphoribosylamine

Sarah N Malkowski, Ruben Atilho, Etienne B Greenlee, Zasha Weinberg, Ronald Breaker, João T Marques
2020-09-03

Beyond Plug and Pray: Context Sensitivity and in silico Design of Artificial Neomycin Riboswitches

Felix Kühnl, Sven Findeiss, Zasha Weinberg, Peter F. Stadler, Mario Mörl
2019-03-01

The structure of the SAM/SAH-binding riboswitch

Zasha Weinberg, Christoph Kreutz
2018-02-12

SAM-VI RNAs selectively bind S-adenosylmethionine and exhibit similarities to SAM-III riboswitches

Madeline E Sherlock, Zasha Weinberg, Ronald Breaker
2017-03-06

Bioinformatic analysis of riboswitch structures uncovers variant classes with altered ligand specificity

Zasha Weinberg, James W Nelson, Madeline E Sherlock
2017-10-01

Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions

Zasha Weinberg, James W Nelson
2016-11-18

Numerous small hammerhead ribozyme variants associated with Penelope-like retrotransposons cleave RNA as dimers.

Zasha Weinberg
2015-08

New classes of self-cleaving ribozymes revealed by comparative genomics analysis

Zasha Weinberg, Kimberly A Harris, Zasha Weinberg, Ronald Breaker
2015-03-01

Bacterial riboswitches cooperatively bind Ni(2+) or Co(2+) ions and control expression of heavy metal transporters

Ronald Breaker, Arati Ramesh, Zasha Weinberg
2014-07-01

Structural, functional, and taxonomic diversity of three preQ1 riboswitch classes

Ronald Breaker, Phillip J. McCown, Zasha Weinberg
2013-10-20

Riboswitches in eubacteria sense the second messenger c-di-AMP

James W Nelson, Zasha Weinberg, Ronald Breaker
2013-11-17

A widespread self-cleaving ribozyme class is revealed by bioinformatics

Ronald Breaker, Zasha Weinberg
2013-06-06

Small, highly active DNAs that hydrolyze DNA

Ronald Breaker, Hongzhou Gu, Zasha Weinberg, Daniel F Berenson
2011-05

Identification of hammerhead ribozymes in all domains of life reveals novel structural variations

Jonathan Perreault, Zasha Weinberg, Pascal Chartrand, Gerardo Ferbeyre, Ronald Breaker
2011-01-04

R2R--software to speed the depiction of aesthetic consensus RNA secondary structures

Ronald Breaker, Zasha Weinberg
2011-12-22

Widespread genetic switches and toxicity resistance proteins for fluoride

Ronald Breaker, Randy B. Stockbridge, Zasha Weinberg
2011-04-01

Meeting report of the RNA Ontology Consortium January 8-9, 2011.

Nikos C. Kyrpides, Rob Knight, Zasha Weinberg, Alain Laederach, Peter Sterk, Neocles Leontis, Folker Meyer, Amanda Birmingham, Antonio Gonzalez, Jesse Stombaugh, Jack A Gilbert, Jose C Clemente
2011-04-07

RNIE: genome-wide prediction of bacterial intrinsic terminators

Paul P. Gardner, Alex Bateman, Zasha Weinberg, Lars Barquist, Eric P. Nawrocki
2010-03-15

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

Zasha Weinberg, Ryan H Moy, Ronald Breaker
2010-07-01

A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate

Dmitry Rodionov, Zasha Weinberg, Ronald Breaker
2009

Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'

Zasha Weinberg, Ronald Breaker
2009-12-01

Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis

Ronald Breaker, Zasha Weinberg, Jonathan Perreault
2009-04-01

Finding non-coding RNAs through genome-scale clustering

Ronald Breaker, Zasha Weinberg, Walter L. Ruzzo
2008-03-27

The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches

Zasha Weinberg, Walter L. Ruzzo, Ronald Breaker, Zizhen Yao
2008-03-19

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism

Ryan H Moy, Zasha Weinberg, Zizhen Yao, Walter L. Ruzzo, Ronald Breaker
2008-12

The RNA WikiProject: community annotation of RNA families

Alex Bateman, Magnus Manske, Jennifer Daub, Sam Griffiths-Jones, Daniel Ramsköld, Zasha Weinberg, Paul P. Gardner, John Tate, William Guy Scott
2007-07-01

A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes

Ronald Breaker, Zizhen Yao, Zasha Weinberg, Walter L. Ruzzo
2006-09

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

Jonathan Eisen, Gerard Manning, Hilary F. Ryder, Zasha Weinberg, Martin Wu, Nicola J Patron, Jennifer R Wortman, Ross Waller, Walter L. Ruzzo, Steven Salzberg, Patrick John Keeling, Dorota Wloga, Qinghu Ren, J. Michael Cherry, Martin A. Gorovsky, Arthur L. Delcher
2005-11-02

Sequence-based heuristics for faster annotation of non-coding RNA families

Zasha Weinberg, Walter L. Ruzzo
2004-10-01

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

Mark Lee, Zasha Weinberg, Walter L. Ruzzo, Ronald Breaker

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