Zizhen Yao

educated at: University of Washington

occupation: výskumník

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Articles 73

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Title

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2005-12-15

CMfinder--a covariance model based RNA motif finding algorithm

Zizhen Yao
2006-03-20

A regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data

Walter L. Ruzzo, Zizhen Yao
2006-01-01

Bone morphogenetic protein 4: potential regulator of shear stress-induced graft neointimal atrophy

Richard D Kenagy, Zizhen Yao, Walter L. Ruzzo, Scott A. Berceli
2007

Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline

Zizhen Yao, Jeffrey E Barrick
2007-07-01

A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes

Ronald Breaker, Zizhen Yao, Zasha Weinberg, Walter L. Ruzzo, Jeffrey E Barrick
2007-09-12

A Marfan syndrome gene expression phenotype in cultured skin fibroblasts

Zizhen Yao, Walter L. Ruzzo
2007-12-20

Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions

Niels Tommerup, Jan Gorodkin, Walter L. Ruzzo, Zizhen Yao
2008-03-27

The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches

Zasha Weinberg, Walter L. Ruzzo, Ronald Breaker, Zizhen Yao, Jeffrey E Barrick
2008-03-19

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism

Ryan H Moy, Zasha Weinberg, Zizhen Yao, Walter L. Ruzzo, Ronald Breaker, Jeffrey E Barrick
2009-11-26

De novo prediction of structured RNAs from genomic sequences

Ivo L. Hofacker, Jan Gorodkin, Zizhen Yao, Walter L. Ruzzo, Jakob H Havgaard
2010-12-21

Differential genomic targeting of the transcription factor TAL1 in alternate haematopoietic lineages

David S. Allan, F J Dilworth, Robert Gentleman, Zizhen Yao
2010-11-15

MyoD directly up-regulates premyogenic mesoderm factors during induction of skeletal myogenesis in stem cells

Zizhen Yao
2010-04-01

Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming

Zizhen Yao, Deepayan Sarkar, Kyle L MacQuarrie, Martin Morgan, Walter L. Ruzzo
2011-12-29

DUX4 activates germline genes, retroelements, and immune mediators: implications for facioscapulohumeral dystrophy.

Zizhen Yao, Walter L. Ruzzo, Rabi Tawil, Stephen J Tapscott, Lauren Snider
2011-05-01

Polycomb-mediated repression during terminal differentiation: what don't you want to be when you grow up?

Zizhen Yao
2012-04-01

Genome-wide DNA methylation studies suggest distinct DNA methylation patterns in pediatric embryonal and alveolar rhabdomyosarcomas

Zizhen Yao
2012-12-10

Comparison of genome-wide binding of MyoD in normal human myogenic cells and rhabdomyosarcomas identifies regional and local suppression of promyogenic transcription factors

Kyle L MacQuarrie, Scott J. Diede, Douglas S Hawkins, Zizhen Yao
2012-03-22

Genetic and epigenetic determinants of neurogenesis and myogenesis

Zizhen Yao, Walter L. Ruzzo
2012-04-29

miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells

Zizhen Yao
2013-04-04

Intrinsic epigenetic regulation of the D4Z4 macrosatellite repeat in a transgenic mouse model for FSHD

Paul Knopp, Zizhen Yao, Peter S Zammit, Silvère M van der Maarel, Lisa Maves, Rune Frants, George W. Padberg, Baziel van Engelen, Rabi Tawil, Yvonne D Krom, Bianca den Hamer, Stephen J Tapscott, Judit Balog, Lauren Snider
2013-02-13

Myod and H19-Igf2 locus interactions are required for diaphragm formation in the mouse

Maud Borensztein, Laurent Tiret, Zizhen Yao
2013-11-21

DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis

Zizhen Yao, Silvère M van der Maarel, Rabi Tawil, Stephen J Tapscott, Judit Balog, Lauren Snider
2013-05-30

Tissue-specific splicing of a ubiquitously expressed transcription factor is essential for muscle differentiation

Zizhen Yao
2013-10-09

Fundamental differences in promoter CpG island DNA hypermethylation between human cancer and genetically engineered mouse models of cancer

Zizhen Yao, Scott J. Diede, William A Weiss
2013-10-25

Discriminative motif analysis of high-throughput dataset

Zizhen Yao, Kyle L MacQuarrie, Walter L. Ruzzo
2013-04-08

Comparison of endogenous and overexpressed MyoD shows enhanced binding of physiologically bound sites

Zizhen Yao, Walter L. Ruzzo
2013-04-08

Pbx and Prdm1a transcription factors differentially regulate subsets of the fast skeletal muscle program in zebrafish

Zizhen Yao, Lisa Maves
2013-11-01

Genome-wide binding of the basic helix-loop-helix myogenic inhibitor musculin has substantial overlap with MyoD: implications for buffering activity

Kyle L MacQuarrie, Zizhen Yao
2014-05-26

DUX4-induced gene expression is the major molecular signature in FSHD skeletal muscle

Silvère M van der Maarel, Zizhen Yao, Rabi Tawil, Stephen J Tapscott, Richard J L F Lemmers, Judit Balog, Lauren Snider
2014-10-24

DUX4 promotes transcription of FRG2 by directly activating its promoter in facioscapulohumeral muscular dystrophy

Tan Phát Pham, Silvère M van der Maarel, Zizhen Yao, Rabi Tawil, Stephen J Tapscott, Judit Balog
2014-07-01

Antagonistic regulation of p57kip2 by Hes/Hey downstream of Notch signaling and muscle regulatory factors regulates skeletal muscle growth arrest

Philippos Mourikis, Despoina Mademtzoglou, Frédéric Relaix, Carmen Birchmeier-Kohler, Zizhen Yao
2015-03-11

Genome engineering of isogenic human ES cells to model autism disorders

Jason L. Stein, Daniel Geschwind, Vilas Menon, Zizhen Yao

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