Jason D. Buenrostro

occupation: researcher

award received: MacArthur Fellows Program

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Articles 52

Date

Title

Authors

2021-06-07

A microRNA expression and regulatory element activity atlas of the mouse immune system

Miriam Merad, Jason D. Buenrostro
2020-02-13

Inference and effects of barcode multiplets in droplet-based single-cell assays

Caleb A Lareau, Sai Ma, Fabiana M Duarte, Jason D. Buenrostro
2020-01-22

Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells

Aviv Regev, Thiago Mattar Cunha, William Antonio Gonçalves, Ya-Chieh Hsu, David E. Fisher, Isaac M Chiu, Jason D. Buenrostro, Leonard I. Zon, Yiqun Su, Eva M Fast, Yulia Shwartz, Pankaj Baral, Megan He, Inbal Rachmin, Sai Ma
2020-06-28

Sustained Activation of AMPK Enhances Differentiation of Human iPSC-Derived Cardiomyocytes via Sirtuin Activation

Jason D. Buenrostro
2020-07-07

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

Aviv Regev, Jason D. Buenrostro, Sai Ma, Tyler Jacks
2020-07-31

Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields

Jason D. Buenrostro
2020-08-12

Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

Caleb A Lareau, Leif S Ludwig, Christoph Muus, Gad Getz, Fei Chen, Jason D. Buenrostro, Nir Hacohen, Catherine J Wu, Aviv Regev, Vijay G Sankaran, Martin J. Aryee, Elena Christian, Karin Pelka, Genevieve Boland
2020-10

Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin

Aviv Regev, Ya-Chieh Hsu, Jason D. Buenrostro, Sai Ma, Jiarui Ding, Bing Zhang, Zachary D Chiang, Caleb A Lareau, Andrew Scott Earl, Vinay K Kartha
2020-08-30

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram | bioRxiv,Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

Aviv Regev, Jason D. Buenrostro, Sanja Vickovic, Sai Ma, Evan Z Macosko, Charles R Vanderburg, Tommaso Biancalani, Åsa Segerstolpe
2020-12-31

In situ genome sequencing resolves DNA sequence and structure in intact biological samples

Andrew C Payne, Zachary D Chiang, Paul L Reginato, Sarah M Mangiameli, Styliani Markoulaki, Andrew Scott Earl, Ajay S Labade, Rudolf Jaenisch, George M. Church, Edward Boyden, Jason D. Buenrostro, Fei Chen
2019-04-23

Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

Huidong Chen, Luca Albergante, Caleb A Lareau, Giosuè Lo Bosco, Alexander Gorban, Martin J. Aryee, Andrei Zinovyev, Jason D. Buenrostro, Guo-Cheng Yuan, Luca Pinello
2019-01-24

The cis-Regulatory Atlas of the Mouse Immune System

Arthur Mortha, Stephen L. Nutt, Jason D. Buenrostro
2019-11-18

Assessment of computational methods for the analysis of single-cell ATAC-seq data

Tommaso Andreani, Luca Pinello, Jason D. Buenrostro
2019-02-28

Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics

Leif S Ludwig, Jacob C Ulirsch, Orit Rozenblatt-Rosen, Jason D. Buenrostro, Aviv Regev, Christoph Muus, Nir Hacohen, Martin J. Aryee, Caleb A Lareau, Vijay G Sankaran, Travis Law, Elena Christian, Karin Pelka, Genevieve Boland
2019-03-11

Interrogation of human hematopoiesis at single-cell and single-variant resolution

Jacob C Ulirsch, Caleb A Lareau, Erik L Bao, Leif S Ludwig, Ansuman T Satpathy, Vinay K Kartha, Rany M Salem, Hilary K Finucane, Martin J. Aryee, Jason D. Buenrostro, Vijay G Sankaran, Joel N Hirschhorn
2019-06-01

Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis

Leif S Ludwig, Erik L Bao, Jacob C Ulirsch, Jason D. Buenrostro, Aviv Regev, Christoph Muus, Martin J. Aryee
2019-06-24

Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility

Caleb A Lareau, Fabiana M Duarte, Vinay K Kartha, Zachary Daniel Burkett, Martin J. Aryee, Ronald Lebofsky, Jason D. Buenrostro, Frank J Steemers
2018-01-15

Rapid chromatin repression by Aire provides precise control of immune tolerance.

Andrew S Koh, David Moskowitz, William Greenleaf, Howard Y. Chang, Gerald Crabtree, Jason D. Buenrostro
2018-04-25

Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation.

William Greenleaf, Jason D. Buenrostro, Michael Corces, Martin J. Aryee
2018-04-09

Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types.

Steven Gazal, Hilary K Finucane, Yakir A Reshef, Kamil Slowikowski, Alexander Gusev, Caleb A Lareau, Giulio Genovese, Soumya Raychaudhuri, Benjamin M. Neale, Alkes Price, Evan Z Macosko, Steven A McCarroll, Jason D. Buenrostro, Bradley Bernstein
2018-06

Induction and transcriptional regulation of the co-inhibitory gene module in T cells

Orit Rozenblatt-Rosen, Aviv Regev, James Nevin, Norio Chihara, Christopher D Buckley, Jason D. Buenrostro, Monika Kowalczyk-Domagała
2018-04-18

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

Huidong Chen, Martin J. Aryee, Luca Albergante, Jason D. Buenrostro, Andrei Zinovyev
2018-01-28

Interrogation of human hematopoiesis at single-cell and single-variant resolution

Erik L Bao, Caleb A Lareau, Jacob C Ulirsch, Jason D. Buenrostro, Joel N Hirschhorn, Martin J. Aryee
2018-12-13

Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules

Alejandro Aguilera-Castrejon, Andreas Trumpp, Jason D. Buenrostro, Amir Giladi, Amos Tanay, Diego Adhemar Jaitin, Yitzhak Pilpel
2018-08-16

Neutralizing Gatad2a-Chd4-Mbd3/NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency

Alejandro Aguilera-Castrejon, Shay Geula, Yifat Merbl, Jason D. Buenrostro
2018-02-09

Neutralizing Gatad2a-Chd4-Mbd3 Axis within the NuRD Complex Facilitates Deterministic Induction of Naïve Pluripotency

Yakoub Hanna, Yifat Merbl, Jason D. Buenrostro
2018-12-17

Single-cell and single-molecule epigenomics to uncover genome regulation at unprecedented resolution

Efrat Shema, Jason D. Buenrostro, Bradley Bernstein
2017-01-24

Single-cell epigenomic variability reveals functional cancer heterogeneity

Nathan C. Sheffield, William Greenleaf, Jason D. Buenrostro
2017-08-21

chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data

William Greenleaf, Jason D. Buenrostro
2017-03-21

Comprehensive and quantitative mapping of RNA-protein interactions across a transcribed eukaryotic genome

Daniel F Jarosz, William Greenleaf, Jason D. Buenrostro
2017-02-27

TOP2 synergizes with BAF chromatin remodeling for both resolution and formation of facultative heterochromatin

Courtney Hodges, William Greenleaf, Jason D. Buenrostro, Cigall Kadoch
2017-02-17

Epigenomics of human CD8 T cell differentiation and aging

Sabine Le Saux, Bin Hu, David Moskowitz, William Greenleaf, Jason D. Buenrostro

Human - wd:Q90251821

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