Elizabeth Purdom

Educated at: Stanford University, Yale University

Occupation: researcher

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Articles 10

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2018-09-04

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

Davide Risso, Diya Das, Elizabeth Purdom, John Ngai, Sandrine Dudoit
2018-08-01

APOBEC mutation drives early-onset squamous cell carcinomas in recessive dystrophic epidermolysis bullosa

Raymond J. Cho, Ludmil B. Alexandrov, Elizabeth Purdom, Cristian Coarfa, Kimal Rajapakshe, Patrick Tassone, Christina Gruber, Josefina Piñón Hofbauer, Stephen Benz, Justin Golovato, Erik A Ehli, Christel M Davis, Dedee Murrell, Julio C Salas-Alanis, Cristina Has, Matthias Titeux, Marcel F. Jonkman, S M Lwin, John Mcgrath, Alain Hovnanian, Kenneth Y. Tsai, Andrew P South, Eric Collisson, Jemima Mellerio
2019-12-05

Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

Nelle Varoquaux, Cheng Gao, Dhruv Patel, Yuko Yoshinaga, Christer Jansson, Krishna K Niyogi, John Vogel, Elizabeth Purdom
2020-03-28

Non-neural expression of SARS-CoV-2 entry genes in the olfactory epithelium suggests mechanisms underlying anosmia in COVID-19 patients

David H Brann, Tatsuya Tsukahara, Caleb Weinreb, Koen Van den Berge, Diya Das, Kelly Street, Hector Roux de Bezieux, Elizabeth Purdom, Sandeep Robert Datta, John Ngai, Hiroaki Matsunami, Ralph Abi Hachem, Sandrine Dudoit
2020-01-07

Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics

Cheng Gao, Liliam Montoya, Ling Xu, Elizabeth Purdom, Vasanth R. Singan, Peggy G. Lemaux, John W Taylor
2020-07-24

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

David H Brann, Tatsuya Tsukahara, Caleb Weinreb, Marcela Lipovsek, Rebecca Chance, Iain C Macaulay, Diya Das, Kelly Street, Hector Roux de Bezieux, Davide Risso, Elizabeth Purdom, Jonathan Mill, Hiroaki Matsunami, Darren Logan, Bradley J. Goldstein, Matthew S Grubb, John Ngai, Sandeep Robert Datta, Koen Van den Berge, Sandrine Dudoit, Ralph Abi Hachem
2021-10-06

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Zizhen Yao, Seth A Ament, Margarita Behrens, Hector Roux de Bezieux, Tommaso Biancalani, A Sina Booeshaghi, Jonathan Crabtree, Megan Crow, Sandrine Dudoit, Michael Hawrylycz, Anup Mahurkar, Joseph R. Nery, Thuc Nghi Nguyen, António Pinto-Duarte, Sebastian Preissl, Elizabeth Purdom, Eeshit Dhaval Vaishnav, Cindy van Velthoven, Z. Josh Huang, Peter V Kharchenko, Aviv Regev, Bosiljka Tasic, Joshua D Welch, Evan Z Macosko, Bing Ren, Joseph R. Ecker, Hongkui Zeng, Eran A. Mukamel, Jacinta Lucero, Lior Pachter, Jesse Gillis
2021-01-26

mbkmeans: Fast clustering for single cell data using mini-batch k-means

Stephanie C Hicks, Elizabeth Purdom, Davide Risso
2021-05-28

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics

Zhaobin Dong, Cheng Gao, Spencer Diamond, Daniel F Caddell, Nelle Varoquaux, Elizabeth Purdom, Jillian Banfield, John W Taylor, Devin Coleman-Derr
2022-07-05

Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities

Cheng Gao, Ling Xu, Liliam Montoya, Elizabeth Purdom, Vasanth R. Singan, John W Taylor

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Elizabeth Purdom

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