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Automated generation of heuristics for biological sequence comparison

author

Ewan Birney

published in: BMC Bioinformatics

date of publication: 2005

language: English

main subject: automation

Cites articles 24

Date

Title

Authors

2004-05

GeneWise and Genomewise

Ewan Birney, Richard M. Durbin, Michele Clamp
2004-05

The Ensembl automatic gene annotation system
2001-12-01

The DNA sequence and comparative analysis of human chromosome 20

Tim Hubbard, Panos Deloukas, James Gilbert, Mike Kay, Sancha Martin, Charles A. Steward, Laurens G Wilming, Richard M. Durbin, C L Bagguley, Darren V. Grafham, Carl D Skuce, Anthony C Tromans, John Sulston, W D H Burrill, Alan Tracey
2001-10

SSAHA: a fast search method for large DNA databases
2000-11-01

MPBLAST : improved BLAST performance with multiplexed queries
2000-04-01

The language of RNA: a formal grammar that includes pseudoknots.

Sean Eddy
1999-06-01

Alignment of whole genomes

Steven Salzberg
1999-09-01

Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs

Ewan Birney, Richard M. Durbin, Niclas Jareborg
1998-09

A computer program for aligning a cDNA sequence with a genomic DNA sequence
1998-07-01

Generalized affine gap costs for protein sequence alignment
1997-09-01

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

David J. Lipman, Webb Miller
1997-01-01

Dynamite: a flexible code generating language for dynamic programming methods used in sequence comparison

Ewan Birney, Richard M. Durbin
1997-08-01

EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA
1996-07-15

PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames

Ewan Birney
1996-08-01

Perspectives: sequence data base searching in the era of large-scale genomic sequencing
1996-01-01

Sequence alignment through pictures.

David B Searls
1995-04-01

A local alignment tool for very long DNA sequences
1993-02-01

Identification of coding regions in genomic DNA sequences: an application of dynamic programming and neural networks
1992-10-01

Aligning two sequences within a specified diagonal band.,Aligning two sequences within a specified diagonal band

William Raymond Pearson, Webb Miller
1990-10

Basic local alignment search tool

David J. Lipman, Warren Gish, Stephen Altschul, Eugene Myers, Webb Miller
1987-10-01

A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons.
1985-03-22

Rapid and sensitive protein similarity searches

David J. Lipman
1982-12-01

An improved algorithm for matching biological sequences.
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Identification of common molecular subsequences

Temple F. Smith, Michael Waterman

Article - wd:Q21061202

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