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RSEARCH: finding homologs of single structured RNA sequences

author

Sean Eddy

2000 -

published in: BMC Bioinformatics

date of publication: 2003-09-22

language: English

Cites articles 60

Date

Title

Authors

2003-01-01

Finding the common structure shared by two homologous RNAs

Hélène Touzet
2002-08-01

Prediction of signal recognition particle RNA genes
2002-07-02

A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

Sean Eddy
2002-05-28

Noncoding RNA genes identified in AT-rich hyperthermophiles

Sean Eddy
2002-05-01

Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus

Timofey S Rozhdestvensky, Jürgen Brosius, Jean-Pierre Bachellerie, Marie-Line Bortolin, Alexander Hüttenhofer
2002-10-16

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

Ronald Breaker
2002-03-22

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

Douglas H. Turner
2002-09-01

A survey of metazoan selenocysteine insertion sequences

Daniel Gautheret
2002-04-01

Computational genomics of noncoding RNA genes

Sean Eddy
2002-05-01

Searching for RNA genes using base-composition statistics
2002-01-01

ScanProsite: a reference implementation of a PROSITE scanning tool.

Elisabeth Gasteiger, Amos Bairoch, Alexandre Gattiker
2002-06

Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores

Timothy L. Bailey, Michael Gribskov
2002-01-01

Pairwise RNA structure comparison with stochastic context-free grammars.
2001-10-01

A computational approach to identify genes for functional RNAs in genomic sequences
2001-08-14

Do mRNAs act as direct sensors of small molecules to control their expression?
2001-08-14

A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria
2001-07-01

Identification of novel small RNAs using comparative genomics and microarrays

Gisela Storz
2001-12

Non–coding RNA genes and the modern RNA world

Sean Eddy
2001-10-26

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
2001-09-01

Computational identification of noncoding RNAs in E. coli by comparative genomics

Sean Eddy
2001-06-26

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
2001-11-01

RNAMotif, an RNA secondary structure definition and search algorithm

Daniel Gautheret
2001-11-01

Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
2001-06-01

Regulatory RNAs

Jan Barciszewski, Volker Erdmann
2001-02-01

New insight into RNase P RNA structure from comparative analysis of the archaeal RNA.
2001-01-01

The estimation of statistical parameters for local alignment score distributions

Terence Hwa
2001-01-01

SRPDB (Signal Recognition Particle Database).

Jan Gorodkin
2000-12-14

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

Richard A. Jorgensen, Hitomi Sakano, Steven Salzberg, W. Richard McCombie, Huaming Chen, Gregory P. Copenhaver
2000-05-01

PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance.
1999-01-01

The Ribonuclease P Database
1999-06-01

RNA secondary structure prediction using stochastic context-free grammars and evolutionary history
1998-01-01

Profile hidden Markov models

Sean Eddy

Article - wd:Q24648763

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