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Next-generation genomics: an integrative approach

published in: Nature Reviews Genetics

date of publication: 2010-07

language: English

main subject: RNA sequencing, genomics

Cites articles 122

Date

Title

Authors

2010-04-30

Systematic analysis of human protein complexes identifies chromosome segregation proteins

Richard M. Durbin, Kim Nasmyth, Jan-Michael Peters, Karl Mechtler, Jan Ellenberg, Jean-Karim Hériché, Siegfried Schloissnig, Björn Hegemann, Alexander Schleiffer, Anthony A. Hyman, Frank Buchholz, Jutta Bulkescher, Yusuke Toyoda, Ina Poser
2010-01

Sequencing technologies - the next generation
2010-01-01

RNA processing and its regulation: global insights into biological networks

Robert B. Darnell
2010-05-01

Distinct epigenomic landscapes of pluripotent and lineage-committed human cells

Ryan Lister, Mattia Pelizzola, Lee E Edsall, Joseph R. Ecker
2010-05-02

A three-dimensional model of the yeast genome

Jay Shendure
2010-03-18

Heritable individual-specific and allele-specific chromatin signatures in humans

Terrence S. Furey, Ewan Birney, Damian Keefe, Francis Collins, Anna Battenhouse, Alan P. Boyle, Gregory E. Crawford, Lingyun Song, Jason D Lieb, Vishwanath R Iyer
2010-03-18

Variation in transcription factor binding among humans

Konrad J. Karczewski, Sebastian M Waszak, Jan Korbel, Joel Rozowsky, Wolfgang Huber, Mark Bender Gerstein, Michael P. Snyder
2010-02-04

Regulation of alternative splicing by histone modifications

Benjamin J. Blencowe, Tom Misteli
2010-03-01

Principles and challenges of genomewide DNA methylation analysis
2010-01-31

A map of open chromatin in human pancreatic islets

Kyle J Gaulton, Lorenzo Pasquali, Jorge Ferrer, Eduard Montanya, Piotr A Mieczkowski, Karen L Mohlke, Jason D Lieb
2010-01-11

Upregulation of c-MYC in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells
2009-10-14

Human DNA methylomes at base resolution show widespread epigenomic differences

Ryan Lister, Mattia Pelizzola, Julian Tonti-Filippini, Lee E Edsall, A. Harvey Millar, Joseph R. Ecker
2009-10-09

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

Eric Lander, Andreas Gnirke, Richard Sandstrom, John Stamatoyannopoulos, Amir Giladi, Bradley Bernstein, Job Dekker, Erez Lieberman Aiden
2009-10

In vivo RNAi screening identifies regulators of actin dynamics as key determinants of lymphoma progression
2009-09-10

Targeted capture and massively parallel sequencing of 12 human exomes

Jay Shendure, Evan E. Eichler, Emily H Turner, Deborah A Nickerson, Choli Lee, Michael J Bamshad, Abigail W Bigham, Arindam Bhattacharjee
2009-09

Insights from genomic profiling of transcription factors

Peggy Farnham
2009

Chromosome conformation capture (from 3C to 5C) and its ChIP-based modification

Alexey Gavrilov, Yegor Vassetzky, Sergey Razin
2009-07-14

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

Eric Lander, Aviv Regev, Alexander van Oudenaarden, Maite Huarte, Arjun Raj, John L. Rinn, Manuel Garber, Mitchell Guttman, Bradley Bernstein
2009-06-17

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

Robert B. Darnell
2009-05-29

A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene

Stephen Elledge, Kwok Kin Wong
2009-05-07

Histone modifications at human enhancers reflect global cell-type-specific gene expression

Manolis Kellis, Gregory E. Crawford, Rhona K Stuart, Victor V Lobanenkov, Alexander Stark, Pouya Kheradpour
2009-02-12

ChIP-seq accurately predicts tissue-specific activity of enhancers

Matthew Blow, Axel Visel, Edward M. Rubin, Len A. Pennacchio
2009-03-12

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

Aviv Regev, Eric Lander, Rudolf Jaenisch, Maite Huarte, Nir Hacohen, John L. Rinn, Manolis Kellis, Manuel Garber, Tarjei S Mikkelsen, Mitchell Guttman, Amir Giladi, Bradley Bernstein, Or zuk, Moran N Cabili, Tyler Jacks
2009-03-05

Transcriptome sequencing to detect gene fusions in cancer

Chandan Kumar-Sinha, Nallasivam Palanisamy, Shanker Kalyana-Sundaram, Arul Chinnaiyan, Christopher A Maher, Xuhong Cao, Terrence R Barrette, Xiaojun Jing
2009

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Richard A. Lempicki
2009-01

RNA-Seq: a revolutionary tool for transcriptomics

Mark Bender Gerstein, Michael P. Snyder
2009-11-01

An oestrogen-receptor-alpha-bound human chromatin interactome

Melissa J Fullwood, Yuriy L. Orlov, Stoyan Velkov, Elaine Chew, Phillips Y Huang, Brenda Y. Han, Kartiki V Desai, W-K Sung, Hendrik Gerard Stunnenberg
2009-10

ChIP-seq: advantages and challenges of a maturing technology
2009-12-24

Genome-wide association data reveal a global map of genetic interactions among protein complexes

Rohith Srivas, Haico van Attikum, Richard M. Karp, Trey Ideker, Nevan Krogan
2009-12-09

Bayesian network analysis of targeting interactions in chromatin

Bas van Steensel, Ulrich Braunschweig, Guillaume J Filion, Trey Ideker
2009-11-17

ENCODE whole-genome data in the UCSC Genome Browser

Angie S. Hinrichs, Donna Karolchik, David Haussler, Ann S Zweig, Kate R. Rosenbloom, Jim Kent, Katrina Learned, Robert M. Kuhn, Brian J Raney, Galt Barber, Pauline A. Fujita, Timothy R Dreszer
2009-11-13

Discovery and annotation of functional chromatin signatures in the human genome

Article - wd:Q28730711

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