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MMM: a sequence-to-structure alignment protocol.

published in: Bioinformatics

date of publication: 2006-08-23

language: English

main subject: sequence alignment

Cites articles 15

Date

Title

Authors

2006-01-19

Variable gap penalty for protein sequence-structure alignment.

Marc A. Martí‐Renom, Andrej Šali
2006-05-01

Multiple mapping method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling.
2004-08-19

MUSCLE: a multiple sequence alignment method with reduced time and space complexity
2003-01-01

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

Amos Bairoch, Rolf Apweiler, Isabelle Q. H. Phan, Brigitte Boeckmann, Elisabeth Gasteiger, Claire O'Donovan, Anne Estreicher, Maria-Jesus Martin
2003-09-01

Consensus alignment for reliable framework prediction in homology modeling.
2002-09-01

ESyPred3D: Prediction of proteins 3D structures.

Christophe Lambert, Xavier De Bolle, Eric Depiereux
2002-01-01

Tolerating some redundancy significantly speeds up clustering of large protein databases.

Adam Godzik
2001-06-29

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

Tom Blundell
2000-09-01

T-Coffee: A novel method for fast and accurate multiple sequence alignment

Cedric Notredame, Desmond G. Higgins
1997-04-01

A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence
1996-03-01

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.
1994-11-01

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Toby J. Gibson, Desmond G. Higgins
1993-12-05

Comparative protein modelling by satisfaction of spatial restraints

Tom Blundell
1992-10-01

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

Rob B Russell, Robert B. Russell, Geoffrey J. Barton
1990

Rapid and sensitive sequence comparison with FASTP and FASTA

Article - wd:Q30356421

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