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MUFOLD: A new solution for protein 3D structure prediction

published in: Proteins

date of publication: 2010-04-01

language: English

main subject: protein structure prediction

Cites articles 45

Date

Title

Authors

2009-01-01

Assessment of CASP8 structure predictions for template free targets

Joel L. Sussman
2009-05-01

Evaluating the absolute quality of a single protein model using structural features and support vector machines.
2009-01-01

Critical assessment of methods of protein structure prediction - Round VIII.

Burkhard Rost, Anna Tramontano, Andriy Kryshtafovych, Krzysztof Fidelis
2008-04-04

Multidimensional scaling for large genomic data sets

Wen-Hsiung Li
2008

I-TASSER server for protein 3D structure prediction
2008-01

The universal protein resource (UniProt)

Emmanuel Boutet
2007-07-01

OPUS-Ca: a knowledge-based potential function requiring only Calpha positions
2007-02-01

MUPRED: a tool for bridging the gap between template based methods and sequence profile based methods for protein secondary structure prediction
2006-11

Statistical potential for assessment and prediction of protein structures
2006-03-14

A method for evaluating the structural quality of protein models by using higher-order phi-psi pairs scoring

Sung-Hou Kim, Gregory E Sims
2005-12

Scalable molecular dynamics with NAMD

Emad Tajkhorshid, Klaus Schulten, Elizabeth Villa, Rosemary Braun, James C Gumbart, James C. Phillips
2005-07-01

SCRATCH: a protein structure and structural feature prediction server
2005-07-01

The HHpred interactive server for protein homology detection and structure prediction

Johannes Söding, Andrei N. Lupas
2005-04-01

Protein homology detection by HMM-HMM comparison

Johannes Söding
2005

SCUD: Fast structure clustering of decoys using reference state to remove overall rotation

Yaoqi Zhou
2004-12-01

Scoring function for automated assessment of protein structure template quality
2004-09-01

Prediction of protein tertiary structure using PROFESY, a novel method based on fragment assembly and conformational space annealing
2004-08-01

Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm

Jeffrey Skolnick, Daisuke Kihara
2004-07-01

Protein structure prediction and analysis using the Robetta server.

David Baker
2004-05-04

Automated structure prediction of weakly homologous proteins on a genomic scale

Jeffrey Skolnick
2004-04-01

SPICKER: a clustering approach to identify near-native protein folds

Jeffrey Skolnick
2004-06-24

Developing optimal non-linear scoring function for protein design
2003-08-01

TOUCHSTONE II: a new approach to ab initio protein structure prediction

Jeffrey Skolnick, Andrzej Koliński, Yang Zhang
2003-01-01

Protein structure prediction via combinatorial assembly of sub-structural units.

Ruth Nussinov, Haim Wolfson
2003-07-01

LGA: A method for finding 3D similarities in protein structures
2002-11-01

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

Yaoqi Zhou
2001-03-01

Prospects for ab initio protein structural genomics.
2000-09

Modeling of loops in protein structures
2000-10-01

Accurate reconstruction of all-atom protein representations from side-chain-based low-resolution models
2000-01-01

The ASTRAL compendium for protein structure and sequence analysis

Michael Levitt
2000-01-01

The Protein Data Bank

Philip Bourne, Ilya Shindyalov, Helen M. Berman
2000-08-01

Protein threading using PROSPECT: design and evaluation.

Article - wd:Q30382728

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