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Assessment of template-based modeling of protein structure in CASP11.

author

Roland Dunbrack

published in: Proteins

date of publication: 2016-04-15

language: English

Cites articles 48

Date

Title

Authors

2016-05-12

Critical assessment of methods of protein structure prediction: Progress and new directions in round XI.

Torsten Schwede, Krzysztof Fidelis
2016-01-12

CASP 11 target classification.

Andriy Kryshtafovych, Bohdan Monastyrskyy, R. Dustin Schaeffer, Nick Grishin, Roland Dunbrack
2015-09-15

Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11.

Jianlin Cheng
2015-08-29

Template based protein structure modeling by global optimization in CASP11.

Juyong Lee
2014-02-01

Assessment of template-based protein structure predictions in CASP10

Gaetano T. Montelione
2013-02-25

Conformational sampling in template-free protein loop structure modeling: an overview
2013-10-18

CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL.

Andriy Kryshtafovych, Bohdan Monastyrskyy, Krzysztof Fidelis
2013-08-27

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests.

Torsten Schwede
2013-10-17

Assessment of CASP10 contact-assisted predictions

Byungkook Lee
2012-09-26

3Drefine: consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization
2012-04-27

Optimal simultaneous superpositioning of multiple structures with missing data

Douglas L. Theobald
2012-07

Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field
2011-10-15

Assessment of template based protein structure predictions in CASP9

Juergen Haas, Torsten Schwede
2011-06-01

A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions

Roland Dunbrack
2011

ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules

Tanja Kortemme, Jacob E Corn, Jeffrey J. Gray, Rhiju Das, Sarel J Fleishman, Jens Meiler, Brian Kuhlman, Andrew Leaver-Fay, Seth Cooper, Zoran B Popovic
2009

Evaluation of template-based models in CASP8 with standard measures

Anna Tramontano, Andriy Kryshtafovych, Domenico Cozzetto, Burkhard Rost, Krzysztof Fidelis
2009-01-01

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models

Jane Shelby Richardson, David C. Richardson, Daniel A. Keedy, Vincent B Chen, Jeffrey J Headd, Gary J Kapral, Christopher J Williams, Jeremy Block, W Bryan Arendall
2009-12

Improved prediction of protein side-chain conformations with SCWRL4

Roland Dunbrack
2009-08-01

REMO: A new protocol to refine full atomic protein models from C-alpha traces by optimizing hydrogen-bonding networks
2009

Assessment of global and local model quality in CASP8 using Pcons and ProQ

Marcin J Skwark, Björn Wallner, Arne Elofsson
2008

I-TASSER server for protein 3D structure prediction
2007

Assessment of CASP7 predictions for template-based modeling targets

Torsten Schwede, Lorenza Bordoli
2007

Assessment of CASP7 predictions in the high accuracy template-based modeling category

Randy Read
2007-01-01

Assessment of CASP7 structure predictions for template free targets

Ralf Jauch, Prasanna R. Kolatkar
2006-09-01

THESEUS: maximum likelihood superpositioning and analysis of macromolecular structures

Deborah S. Wuttke
2005

Assessment of CASP6 predictions for new and nearly new fold targets

Byungkook Lee
2005-01-01

Assessment of fold recognition predictions in CASP6.

Roland Dunbrack
2005

Assessment of predictions submitted for the CASP6 comparative modeling category

Iakes Ezkurdia
2005-04-01

Protein homology detection by HMM-HMM comparison

Johannes Söding
2004-07-01

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes

Jane Shelby Richardson, David C. Richardson
2003-01-01

Predictions without templates: new folds, secondary structure, and contacts in CASP5

Patrick Aloy, Alexander Stark, Caroline Hadley, Rob B Russell, Robert B. Russell
2003-01-01

CASP5 assessment of fold recognition target predictions.

Nick Grishin, Ruslan I Sadreyev

Article - wd:Q30386933

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