Inventaire - teman dan komunitas anda adalah perpustakaan terbaik - Inventaire

iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data

pengarang

Derek Y Chiang

Michael Brudno

Orion J Buske

diterbitkan dalam: Genome Research

tanggal publikasi: 2012-11-29

subyek utama: RNA sequencing, RNA-Seq

Cites articles 23

Date

Judul

Pengarang

2012-05-25

Savant Genome Browser 2: visualization and analysis for population-scale genomics

Mark D. Robinson, Shoshana Wodak, Michael Brudno
2012-04-04

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

Gavin Ha, Damian Yap, Daniel Lai, Inanc Birol, Malachi Griffith, Gregg B Morin, Suet-feung Chin, Christina Curtis, John R. Mackey, Wyeth Wasserman, Steven Jones, Connie Eaves, Jiarui Ding, Samuel Aparicio, Oscar M Rueda, Sohrab P Shah, Paul D P Pharoah, Angela Burleigh, Yongjun Zhao, David Huntsman, Stephen K L Chia, Karey Shumansky, Gulisa Turashvili
2011-12-01

Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation

Jingyi Jessica Li, Peter J. Bickel
2011-09-11

Frequent pathway mutations of splicing machinery in myelodysplasia

Kenichi Yoshida, Makoto Otsu, Sumio Sugano, Yutaka Suzuki, Satoru Miyano, Hiromitsu Nakauchi, Masashi Sanada, Yasunobu Nagata, Seishi Ogawa
2011-08-08

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data

Derek Y Chiang
2011-04-19

Estimation of alternative splicing isoform frequencies from RNA-Seq data

Ion I. Mandoiu, Alexander Zelikovsky
2011-03-01

Inference of isoforms from short sequence reads
2011-02-25

Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing

Brian M Bot, Krishna R Kalari, Zhifu Sun, Edith A. Perez
2010-11-07

Analysis and design of RNA sequencing experiments for identifying isoform regulation

Edoardo Airoldi
2010-08-27

MapSplice: accurate mapping of RNA-seq reads for splice junction discovery

Charles M. Perou, Piotr A Mieczkowski, Derek Y Chiang
2010-06-20

Savant: genome browser for high-throughput sequencing data

Michael Brudno
2010-06-15

rQuant.web: a tool for RNA-Seq-based transcript quantitation

Gunnar Rätsch
2010-05

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Steven Salzberg, Lior Pachter, Cole Trapnell, Barbara J. Wold
2009-12-18

RNA-Seq gene expression estimation with read mapping uncertainty

Colin N Dewey
2009-07-15

Fast and accurate short read alignment with Burrows-Wheeler transform

Richard M. Durbin, Heng Li
2009-05-01

TopHat: discovering splice junctions with RNA-Seq

Steven Salzberg, Lior Pachter, Cole Trapnell
2009

A global view of cancer-specific transcript variants by subtractive transcriptome-wide analysis

Chunjiang He, Zhixiang Zuo, Rongjia Zhou, Hanhua Cheng
2009-01

RNA-Seq: a revolutionary tool for transcriptomics

Mark Bender Gerstein, Michael P. Snyder
2007-12-03

Insights into the connection between cancer and alternative splicing
2007-03-01

Alternative splicing in cancer: noise, functional, or systematic?

Rolf Inge Skotheim
2005-03-01

Are splicing mutations the most frequent cause of hereditary disease?

Núria López-Bigas, Roderic Guigó i Serra, Genís Parra, Benjamin Audit, Christos Ouzounis
2002-01-01

Splicing graphs and EST assembly problem

Max A. Alekseyev, Pavel A. Pevzner
1995-02-10

Exon recognition in vertebrate splicing

Artikel - wd:Q30579842

Selamat datang di Inventaire

perpustakaan teman-teman dan komunitas anda

pelajari lebih lanjut

anda sedang luring