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Species delimitation using genome-wide SNP data

著者

Adam D. Leaché

Vladimir N. Minin

Matthew K. Fujita

この作品が含まれる作品: Systematic Biology

出版日: 2014-03-12

Cites articles 35

Date

タイトル

著者

2014-04

BEAST 2: a software platform for Bayesian evolutionary analysis

Andrew Rambaut, Marc A. Suchard, Remco Bouckaert, Denise Kühnert, Alexei J. Drummond, Chieh-Hsi Wu
2014-01-08

Species detection and individual assignment in species delimitation: can integrative data increase efficacy?

Lacey Knowles, Danielle L. Edwards
2013-11-20

Species delimitation using Bayes factors: simulations and application to the Sceloporus scalaris species group (Squamata: Phrynosomatidae).

Robert W. Bryson
2013-09-10

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

Brant C. Faircloth, Robb T. Brumfield, Travis Glenn, Brian Tilston Smith
2013-07-16

How to fail at species delimitation
2013-05-09

Understanding the origin of species with genome-scale data: modelling gene flow

Vitor Sousa, Jody Hey
2013-02-27

Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization
2013-03-06

Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution

Guy Baele, Philippe Lemey, Stijn Vansteelandt
2012-10-12

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

Oliver M. Selz, Catherine E. Wagner, Ole Seehausen, Salome Mwaiko
2012-11

Ancient admixture in human history

Nadin Rohland, Swapan Mallick, Nick Patterson, デイヴィッド・ライク, Priya Moorjani
2012

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

Heidi S Fisher, Hopi Hoekstra, Jesse N. Weber
2012-05-25

Coalescent-based species delimitation in an integrative taxonomy

Adam D. Leaché, Craig Moritz, Frank T. Burbrink, Jimmy Adair McGuire, Matthew K. Fujita
2012

Inferring phylogenies from RAD sequence data

Corrie Moreau
2012-03-14

Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis

Noah Rosenberg, ジョセフ・フェルゼンシュタイン
2012-09

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

Trevor Bedford
2012-01-09

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales.

Brant C. Faircloth, John E. McCormack, Robb T. Brumfield, Travis Glenn
2012-10-12

Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex.

Rachel Schwartz, H. Bradley Shaffer, David W. Weisrock
2011-08-01

Stacks: building and genotyping Loci de novo from short-read sequences

John Postlethwait, Julian Catchen
2011-07-20

Joint inference of population assignment and demographic history

Jody Hey
2010-12-02

SpedeSTEM: a rapid and accurate method for species delimitation

Bryan C Carstens
2010-05-25

The integrative future of taxonomy

Aurélien Miralles, Miguel Vences, Ignacio J. de la Riva, Jose M. Padial
2010-05-18

Bayesian species delimitation using multilocus sequence data
2010-02

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

Eric A Johnson, William A Cresko, Susan Bassham
2010-10-20

Availability of new Bayesian-delimited gecko names and the importance of character-based species descriptions.

Salvador Carranza, Andreas Schmitz, Theodore Papenfuss, Wolfgang Böhme, L. Lee Grismer, Jesse Leland Grismer, Rafe M. Brown, Aaron M. Bauer, Robert Frederick Inger, Bryan L. Stuart, Natalia Ananjeva
2010-10-20

A coalescent perspective on delimiting and naming species: a reply to Bauer et al.

Matthew K. Fujita
2010-06-02

Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)

Adam D. Leaché, Matthew K. Fujita
2010-11-18

The accuracy of species tree estimation under simulation: a comparison of methods.

Adam D. Leaché
2009-11-11

Bayesian inference of species trees from multilocus data

Joseph Heled, Alexei J. Drummond
2009-07-22

Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma)

Adam D. Leaché, Michelle S. Koo, Theodore Papenfuss, Jimmy Adair McGuire
2009-11-10

New heuristic methods for joint species delimitation and species tree inference.

Brian C O'Meara
2008-09-09

A two-stage pruning algorithm for likelihood computation for a population tree

ジョセフ・フェルゼンシュタイン
2007-06-01

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

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