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From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline

author

Stacey Gabriel

David Altshuler

Eric Banks

Mark DePristo

Ami Levy Moonshine

Khalid Shakir

Chris Hartl

Ryan Poplin

published in: Current Protocols in Bioinformatics

date of publication: 2013-10-01

language: English

main subject: best practice

Cites articles 8

Date

Title

Authors

2011-05

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark Joseph Daly, David Altshuler, Stacey Gabriel, Manuel Antonio Rivas
2010-10-01

A map of human genome variation from population-scale sequencing

David Altshuler, Adam Auton, Richard M. Durbin, 1000 Genomes Project
2010-09-01

Integrating common and rare genetic variation in diverse human populations

Panos Deloukas, Sarah E. Hunt, Kyle Chang, Chris Barnes, Kati Kristiansson, Nicole Soranzo, Claudia Gonzaga-Jauregui, Verneri Anttila, William M McLaren, Clement Adebamowo, Julio Licinio, Pardis C. Sabeti, Stephen F Schaffner, Michael Inouye, Leena Peltonen-Palotie, Mark Joseph Daly, Matthew Hurles, Vivian Ota Wang, Lora Lewis, Alicia Hawes, David A. Wheeler, Stephen Leslie
2010-09

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

David Altshuler, Kristian Cibulskis, Stacey Gabriel, Aaron McKenna, Mark Joseph Daly, Andrey Sivachenko, Eric Banks, Andrew Kernytsky, Mark DePristo
2010-01-15

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li, Richard M. Durbin
2009-08-15

The Sequence Alignment/Map format and SAMtools

Richard M. Durbin, Heng Li, Gonçalo Abecasis, Jue Ruan
2006-08-10

An initial map of insertion and deletion (INDEL) variation in the human genome

Ryan E. Mills
2001-01-01

dbSNP: the NCBI database of genetic variation

Article - wd:Q30872351

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