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MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data

auteur·ice

Karl Mechtler

Gernot Stocker

Thomas R Burkard

Jürgen Hartler

Gerhard G Thallinger

Zlatko Trajanoski

Alexander Sturn

publié dans: BMC Bioinformatics

date de publication: 2007-06-13

Articles cités 35

Date

Titre

Auteur·ices

2007-01-01

TOPP--the OpenMS proteomics pipeline

Oliver Kohlbacher, Nico Pfeifer
2006-04-07

Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling

Janet Rossant, Alexandr Ignatchenko, Pingzhao Hu, Thomas Kislinger, Andrew Emili, Quaid D Morris
2006-01-01

Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments

Jimmy K. Eng
2006-01-01

The PeptideAtlas project

Ruedi Aebersold, Alexey I. Nesvizhskii, Jimmy K. Eng, Eric W Deutsch, James S. Eddes, Parag Mallick, Frank Desiere, Nichole L King, Sharon Chen, Sandra N Loevenich
2006-10-01

GAPP: a fully automated software for the confident identification of human peptides from tandem mass spectra

Conrad Bessant
2005-08-02

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

Ruedi Aebersold, Jimmy K. Eng, Andrew Keller
2005-09-01

STEM: a software tool for large-scale proteomic data analyses

Masato Taoka, Hiroyuki Kaji
2005-08-01

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

David Fenyo, Joshua N Adkins, Gil Omenn, Richard Simpson, Jimmy K. Eng, Eugene Kapp, Lisa Connolly, John A. Chakel
2005-08-01

PRIDE: the proteomics identifications database

Henning Hermjakob, Rolf Apweiler, Kris Gevaert, Joël Vandekerckhove, Lennart Martens, Chris F Taylor
2005

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Gernot Stocker, Marcel Scheideler, Hubert Hackl, Zlatko Trajanoski, Alexander Sturn, Andreas Prokesch
2005-11-01

VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins

Rune Matthiesen, Jakob Bunkenborg, Morten Beck Trelle, Ole N Jensen, Peter Højrup
2005-09-01

Further steps in standardisation. Report of the second annual Proteomics Standards Initiative Spring Workshop (Siena, Italy 17-20th April 2005).

Sandra Orchard, Henning Hermjakob, Rolf Apweiler, Chris F Taylor, Frank Potthast
2005-02-03

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Jari Häkkinen
2004-11-01

Open source system for analyzing, validating, and storing protein identification data
2004-11

A common open representation of mass spectrometry data and its application to proteomics research

Henning Hermjakob, Norman William Paton, Rolf Apweiler, Catherine Costello, Chris F Taylor, Richard Simpson, Richard D. Smith, Ruedi Aebersold, Jimmy K. Eng, Eric W Deutsch, Gil Omenn, Eugene Kapp, Patrick G A Pedrioli, Mathijs Vogelzang, Brian Raught, Brian R. Pratt, Ruth H Angeletti, Sequin Huang, M E McComb, Robert Hubley
2004

Open mass spectrometry search algorithm
2004-07-29

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Jan Christian Brønd, Christian H. Ahrens, Keiryn L Bennett
2004-06-12

TANDEM: matching proteins with tandem mass spectra
2004-02-12

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Michele Clamp, Geoffrey J. Barton
2004-02-01

Common interchange standards for proteomics data: Public availability of tools and schema

Henning Hermjakob, Rolf Apweiler, Jérôme Wojcik, David J. Sherman, Sandra Orchard, Kai Runte
2004-09-01

Database-independent, database-dependent, and extended interpretation of peptide mass spectra in VEMS V2.0.

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2003-12-01

Bioinformatics support for high-throughput proteomics

Folker Meyer, Alfred Pühler, Alexander Goesmann, Christian Rückert, Alice Carolyn MacHardy, Daniela Bartels, Burkhard Linke, Michael Dondrup, Sebastian Kespohl
2003-12-01

Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry

Ruedi Aebersold
2003-02-10

PRISM, a generic large scale proteomic investigation strategy for mammals

Janet Rossant, Thomas Kislinger, Andrew Emili
2003-03-01

A systematic approach to modeling, capturing, and disseminating proteomics experimental data

Norman William Paton, Douglas Kell, Andy Brass, Alistair Brown, Simon J. Hubbard, Shabaz Mohammed, Chris F Taylor, Ruedi Aebersold, Eric W Deutsch, Kathryn Lilley, Michael J Deery
2003-07-01

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Sandra Orchard, Henning Hermjakob, Rolf Apweiler
2002-10-15

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

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2002-07-15

BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data

Johan Vallon-Christersson, Sofia Gruvberger
2002-04-01

An efficient algorithm for large-scale detection of protein families

Anton Enright
2002-09-01

CHOMPER: a bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies

Richard Simpson
2001-12

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

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1999-12

Probability-based protein identification by searching sequence databases using mass spectrometry data

Article - wd:Q31115628

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