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GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

author

Joy D Van Nostrand

Zhili He

Terry C Hazen

Jizhong Zhou

Terry J. Gentry

Christopher L Hemme

Yifeng Yin

Jost Liebich

published in: The ISME Journal

date of publication: 2010-04-29

Cites articles 54

Date

Title

Authors

2010-03-23

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

Zhili He, Joy D Van Nostrand, Sarah E. Hobbie, Sanghoon Kang, Peter B. Reich, Jizhong Zhou, Laurie Kellogg
2009-12-28

Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities.

Guanghe Li, Zhili He, Jizhong Zhou, Yuting Liang
2009-08-28

Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field

Guanghe Li, Joy D Van Nostrand, Zhili He, Jizhong Zhou, Yuting Liang
2009-12-01

Elevated CO2 reduces losses of plant diversity caused by nitrogen deposition

Peter B. Reich
2009-04-17

Tracking functional guilds: "Dehalococcoides" spp. in European river basins contaminated with hexachlorobenzene

Hauke Smidt, Willem de Vos, Miriam H A van Eekert, Gosse Schraa
2009-07-14

GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer

Terence L. Marsh, David Watson, Joy D Van Nostrand, Zhili He, Baohua Gu, Terry C Hazen, James M. Tiedje, Jizhong Zhou, Weimin Wu, Jack Carley, Philip M. Jardine, Craig Criddle
2009-03-09

GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent

Joy D Van Nostrand, Zhili He, Jizhong Zhou
2009-03-01

Predictive microbial ecology
2009-05-01

Functional gene array-based analysis of microbial community structure in groundwaters with a gradient of contaminant levels

Joy D Van Nostrand, Christopher W Schadt, Zhili He, David Watson, Anthony V Palumbo, Terry C Hazen, Jizhong Zhou, Philip M. Jardine
2009-12-02

Microbial functional structure of Montastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

Joy D Van Nostrand, Jizhong Zhou
2008-10-09

Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts

Joy D Van Nostrand, Jizhong Zhou, Olivia U. Mason
2008-05-30

Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico

James M. Tiedje, Jizhong Zhou, Laurie Kellogg, Allan H. Devol
2008-05-28

Spatial scaling of functional gene diversity across various microbial taxa

Sanghoon Kang, Christopher W Schadt, Jizhong Zhou, Charles T Garten
2007-12-01

A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea

Ivan A. Berg, Daniel Kockelkorn
2007-05-01

GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes

Zhili He, Christopher W Schadt, Baohua Gu, Jizhong Zhou, Zhijian Huang, Terry J. Gentry, Jost Liebich, Craig Criddle
2007-05-24

Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs).

James M. Tiedje, Jizhong Zhou, Mary Beth Leigh, Vivian H. Pellizari
2007-10-05

Molecular analysis of the diversity of sulfate-reducing and sulfur-oxidizing prokaryotes in the environment, using aprA as functional marker gene
2007-08-01

Comparison of gyrB gene sequences, 16S rRNA gene sequences and DNA-DNA hybridization in the Bacillus subtilis group.
2007-05-24

Functional microarray analysis of nitrogen and carbon cycling genes across an Antarctic latitudinal transect

Zhili He, Sanghoon Kang, Étienne Yergeau, Jizhong Zhou, George A. Kowalchuk
2006-09-01

Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation

Eoin L. Brodie, Tetsu K Tokunaga, Gary L Andersen, Terry C Hazen, Mary K. Firestone
2006-12-20

Urban aerosols harbor diverse and dynamic bacterial populations

Yvette M Piceno, Eoin L. Brodie, Gary L Andersen, Jordan P Moberg
2006-09-01

A framework for the use of genomics data at the EPA.

David J. Dix
2006-01-01

The University of Minnesota Biocatalysis/Biodegradation Database: the first decade

Lawrence P. Wackett
2006-02-01

Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications

Jizhong Zhou
2006-09-01

Microbial diversity and bioremediation of a hydrocarbon-contaminated aquifer (Vega Baja, Puerto Rico)

Christopher W Schadt, Jizhong Zhou
2006-07-01

Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification

Jizhong Zhou
2005-08-01

Computational improvements reveal great bacterial diversity and high metal toxicity in soil
2005-07-01

Empirical establishment of oligonucleotide probe design criteria

Zhili He, Jizhong Zhou, Matthew W. Fields
2005-10-24

Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation

Zhili He, Jizhong Zhou
2005-09-15

Genome sequencing in microfabricated high-density picolitre reactors

Elizabeth Nickerson, Joel S. Bader, Alexander Tomasz, Eugene Myers
2005-10-12

A bacterial view of the periodic table: genes and proteins for toxic inorganic ions

Simon Silver
2005-05-01

Elevated microbial tolerance to metals and antibiotics in metal-contaminated industrial environments

Ramunas Stepanauskas

Article - wd:Q33567621

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