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The ligand-free state of the TPP riboswitch: a partially folded RNA structure

author

Sebastian Doniach

1934 -

Jan Lipfert

1977 -

Daniel Herschlag

1958 -

published in: Journal of Molecular Biology

date of publication: 2009-11-17

language: English

Cites articles 62

Date

Title

Authors

2009-07-09

A switch in time: detailing the life of a riboswitch
2009-01-01

Riboswitch conformations revealed by small-angle X-ray scattering

Sebastian Doniach, Jan Lipfert, Daniel Herschlag
2009-03-12

Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch

Dinshaw J. Patel
2009-02

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

Daniel Herschlag, Alain Laederach, Rhiju Das, Russ Altman
2008-12-08

A repulsive field: advances in the electrostatics of the ion atmosphere

Sebastian Doniach, Jan Lipfert, Daniel Herschlag
2008-10-03

RNA folding: thermodynamic and molecular descriptions of the roles of ions
2008-09-01

The complete VS ribozyme in solution studied by small-angle X-ray scattering

Jan Lipfert, Sebastian Doniach, Jonathan Ouellet
2008-08-15

Crystal structure of the lysine riboswitch regulatory mRNA element
2008-07-02

Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch

Stephane Thore, Nenad Ban
2008-03-06

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

Marc Parisien, François Major
2008-01-03

Direct observation of hierarchical folding in single riboswitch aptamers

William Greenleaf, Steven M. Block
2007-11

Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs

David K. Shintani, Pamela J. Green
2007-10-24

Ligand-induced folding of the guanine-sensing riboswitch is controlled by a combined predetermined induced fit mechanism

Hans A Heus
2007-09-07

Structure and mechanism of a metal-sensing regulatory RNA

Catherine A Wakeman
2007-08-30

Structural features of metabolite-sensing riboswitches

Catherine A Wakeman
2007-09-11

Automated de novo prediction of native-like RNA tertiary structures

Rhiju Das, David Baker
2007-03-23

The intricate world of riboswitches
2007-01-01

Small-angle X-ray scattering from RNA, proteins, and protein complexes

Sebastian Doniach, Jan Lipfert
2007-01-01

Structures of RNA switches: insight into molecular recognition and tertiary structure

Boris Fürtig, Harald Schwalbe, Janina Buck, Jonas Noeske
2007-01

Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor
2007-08-09

Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach

Kathrin Lang
2006-10-13

Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae

Sebastian Doniach, Jan Lipfert, Rhiju Das, Daniel Herschlag
2006-09-22

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
2006-06-29

Structure of the S-adenosylmethionine riboswitch regulatory mRNA element

Robert T Batey
2006-05-21

Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

Alexander Serganov, Ronald Breaker
2006-05-04

Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand

Nenad Ban
2005-01-01

Ions and RNA folding
2005-04-01

Metal ions and RNA folding: a highly charged topic with a dynamic future

Sarah A Woodson
2005-11-10

Concordant exploration of the kinetics of RNA folding from global and local perspectives

Hye Yoon Park, Kurt Andresen
2004-11-18

Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine
2004-10

UCSF Chimera--a visualization system for exploratory research and analysis

Thomas E Ferrin
2004-06

Gene regulation by riboswitches

Article - wd:Q34151962

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