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Hyb-Seq: Combining target enrichment and genome skimming for plant phylogenomics

autor

Kevin Weitemier

Richard Cronn

Roswitha Schmickl

Angela McDonnell

Mark Fishbein

2000 -

Aaron Liston

publicado en: Applications in Plant Sciences

fecha de publicación: 2014-08-29

idioma: inglés

tema principal: Filogenómica

Cites articles 32

Fecha

Título

Autores

2014-02-06

A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae

Rishi R Masalia, Rebecca B Dikow, Loren H. Rieseberg, Victoria Ann Funk, Jennifer R. Mandel
2014-04-01

Trimmomatic: a flexible trimmer for Illumina sequence data

Björn Usadel, Anthony M. Bolger
2013-01-31

A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes

Pamela S. Soltis, Samuel F Brockington, Matthew A Gitzendanner, Douglas E. Soltis, Michael J. Moore, Norman A Douglas
2013-08-07

Targeted sequence capture provides insight into genome structure and genetics of male sterility in a gynodioecious diploid strawberry, Fragaria vesca ssp. bracteata (Rosaceae).

Tia-Lynn Ashman
2013-05-09

STRAW: Species TRee Analysis Web server

Travis Glenn
2013-05-07

Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae)
2013

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

Brant C. Faircloth, Robb T. Brumfield, Travis Glenn
2013-02-01

Reprint of: using nuclear gene data for plant phylogenetics: progress and prospects
2013-05-08

Inferring ancient divergences requires genes with strong phylogenetic signals

Antonis Rokas
2013-06-01

Capturing protein-coding genes across highly divergent species

Michael Hofreiter
2012

Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species

Elsa Góngora-Castillo, Kranthi K. Mandadi, Kevin L. Childs, John P Hamilton, Sarah O'Connor, Dean DellaPenna
2012

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)
2012-04-10

Long identical multispecies elements in plant and animal genomes

Gavin C. Conant, Joseph Christopher Pires, Michael Freeling, Eric Lyons
2012-02-06

Targeted enrichment strategies for next-generation plant biology.

Richard Cronn, Aaron Liston
2012-01-09

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales.

Brant C. Faircloth, John E. McCormack, Robb T. Brumfield, Travis Glenn
2011-12-14

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

Kevin Weitemier, Richard Cronn, Mark Fishbein, Aaron Liston
2011-06-17

Genome-wide genetic marker discovery and genotyping using next-generation sequencing
2011-07

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Kerstin Lindblad-Toh, Aviv Regev, Chad Nusbaum, Andreas Gnirke, Evan Mauceli, Nir Friedman, Nicholas Rhind, Nir Hacohen, Raktima Raychowdhury, Amir Giladi, J Z Levin, Xian Adiconis, Bruce Birren, Qiandong Zeng, Brian J Haas
2011-05-04

Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing

Kevin Weitemier, Richard Cronn, Mark Fishbein, Aaron Liston
2011-04-10

Ancestral polyploidy in seed plants and angiosperms

Yuannian Jiao, Norman J. Wickett, Douglas E. Soltis, Pamela S. Soltis, Claude W dePamphilis, Jim Leebens-Mack, Stephan C Schuster, Andre S Chanderbali, Saravanaraj Ayyampalayam, Lena L Landherr, Paula E Ralph, Lynn P Tomsho, Haiying Liang, Sandra W. Clifton, Scott E Schlarbaum
2011-11-14

Phylogenetic Relationships of Asclepias (Apocynaceae) Inferred from Non-coding Chloroplast DNA Sequences

Mark Fishbein
2010-10-11

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

Scott V. Edwards
2010-02-24

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

Joseph Christopher Pires, Claude W dePamphilis, Jim Leebens-Mack, P Kerr Wall, Jill M. Duarte, Lena L Landherr, Patrick P Edger
2009-02-27

ABySS: a parallel assembler for short read sequence data

Shaun Jackman, Steven Jones, Inanc Birol
2008-03-27

Recent developments in the MAFFT multiple sequence alignment program

Kazutaka Katoh
2007-02-01

Inconsistency of phylogenetic estimates from concatenated data under coalescence

Laura S Kubatko
2007-07-19

Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae)

Mark A Chapman, Jian-Cheng Chang, John M Burke
2006-09-01

Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade

Lukas A Mueller
2006-11-01

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis
2006-07-17

Expressed sequence tags from Madagascar periwinkle (Catharanthus roseus).

Jun Murata, Dorothee Bienzle, Christoph W. Sensen
2006-07-01

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li
2002-03-20

BLAT—The BLAST-Like Alignment Tool

Artículo - wd:Q34172938

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