Inventaire - your friends and communities are your best library

Computational identification and functional predictions of long noncoding RNA in Zea mays

published in: PLOS One

date of publication: 2012-08-16

language: English

main subject: maize

Cites articles 78

Date

Title

Authors

2012-02-13

Large-scale identification of mirtrons in Arabidopsis and rice
2011-09-29

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions

Franklin L Zhong, Steven E Artandi
2011-07-31

Dual RNAs in plants

Federico Ariel, Martin Crespi
2011-07-22

Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing.

Craig Pikaard
2011-07-01

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

Manolis Kellis
2011-05-04

DREME: motif discovery in transcription factor ChIP-seq data

Timothy L. Bailey
2011-04-25

Plant siRNAs from introns mediate DNA methylation of host genes
2011-04-21

Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene
2011-01

lncRNAdb: a reference database for long noncoding RNAs

Michael B. Clark, Paulo P Amaral, Marcel E. Dinger, John S. Mattick
2011-01

Ongoing and future developments at the Universal Protein Resource

Sebastien Gehant, Steven Rosanoff, Jerven Bolleman, Ruth Y. Eberhardt, Catherine Rivoire, Emmanuel Boutet, Anne Morgat, Elisabeth Coudert, Klemens Pichler, Benoit Bely, Nikolas Pontikos, Michael Tognolli, Michel Schneider, Alan Wilter Sousa da Silva, Jules Jacobsen, Lionel Breuza, Ivo Pedruzzi, Chuming Chen, Anne Estreicher, Rebecca E. Foulger, John S Garavelli, Michele Magrane, Sylvain Poux, Cecilia Arighi, Elisabeth Gasteiger, Nicole Redaschi, Raja Mazumder, Leyla Garcia, Alan J Bridge, Rachael Huntley, Claire O'Donovan, Ioannis Xenarios, Maria-Jesus Martin, Sandra Orchard, Rolf Apweiler, Amos Bairoch, Ursula Hinz
2010-12-22

Genome-wide identification of polycomb-associated RNAs by RIP-seq

Jeannie T. Lee
2010-12-02

Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA.
2010-11-02

Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome

Marcel E. Dinger, John S. Mattick, Marjan Askarian-Amiri, Sean Grimmond, Gregory J Goodall
2010-08-06

Long noncoding RNA as modular scaffold of histone modification complexes

Eran Segal
2010-06-29

RNA-mediated trans-communication can establish paramutation at the b1 locus in maize

Blake Meyers, Pamela J. Green
2009-11-01

The B73 maize genome: complexity, diversity, and dynamics

Patrick S Schnable, Matthew Vaughn, Cheng-Ting Yeh, William Brad Barbazuk, Regina Baucom, Thomas Brutnell, Cristian Chaparro, James C Estill, Dan Nettleton, Bryan W Penning, Anupma Sharma, W. Richard McCombie, Rod A. Wing, Susan R. Wessler, Jeffrey L. Bennetzen, Phillip J SanMiguel, Robert Anthony Martienssen, Scott J Emrich, Kristi Collura, Jayson Talag, Carol Soderlund, Asif T. Chinwalla, Richard K. Wilson, Kim Delehaunty, Lucinda Fulton, Doreen Ware, Joshua Stein, Shiran Pasternak, Chengzhi Liang, Laura Courtney, Scott S. Kruchowski, Chad Tomlinson, Cindy Strong, Catrina Fronick, Kerri Ochoa, Jamey Higginbotham, Jason E. Waligorski, Nay Thane, Matt Cordes, Sara Kohlberg, Kelly Mead, Kevin Crouse, Gabriel Scara, Marina Wissotski, Michele Braidotti, Wolfgang Golser, Andrea Zuccolo, Chuanzhu Fan, Aswathy Sebastian, Melissa Kramer, Lori Spiegel, Lidia U Nascimento, Theresa Zutavern, Apurva Narechania, Ben P Faga, Jean-Marc Deragon, Jeffrey A Jeddeloh, Sanzhen Liu, Lalit Ponnala, Nathan M Springer, Richard P Westerman, Lixing Yang, R Kelly Dawe, Jiming Jiang, Sandra W. Clifton, Shiguo Zhou
2009-11-20

Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs

Patrick S Schnable
2009-11-20

Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs

Virginia Walbot, Angelina Angelova
2009-11-20

A genome-wide characterization of microRNA genes in maize
2009-09-21

Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications

Marcel E. Dinger, John S. Mattick, Paulo P Amaral
2009-10

Mechanisms of polycomb gene silencing: knowns and unknowns
2009-08-27

Diversity of Polycomb group complexes in plants: same rules, different players?

Lars Hennig
2009-07-29

Regulatory roles of natural antisense transcripts
2009-01-01

Small RNAs and their roles in plant development

Chen Xuemei
2009-07-14

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

Eric Lander, Aviv Regev, Alexander van Oudenaarden, Maite Huarte, Arjun Raj, John L. Rinn, Manuel Garber, Mitchell Guttman, Bradley Bernstein
2009-06-18

Evidence-based gene predictions in plant genomes

Lincoln Stein
2009-05

RNA polymerase V transcription guides ARGONAUTE4 to chromatin

Craig Pikaard
2009-03-23

Biocomputational prediction of non-coding RNAs in model cyanobacteria

Jens Georg, Björn Voss, Wolfgang René Hess
2009-03-12

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

Aviv Regev, Eric Lander, Rudolf Jaenisch, Maite Huarte, Nir Hacohen, John L. Rinn, Manolis Kellis, Manuel Garber, Tarjei S Mikkelsen, Mitchell Guttman, Amir Giladi, Bradley Bernstein, Or zuk, Moran N Cabili, Tyler Jacks
2009-01-14

The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing

Wolf Reik, Elizabeth Perdeaux, Christel Krueger, Annabelle Lewis, Miguel R Branco, Peter Fraser
2009-12-01

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target.

Szymon Świeżewski, Caroline Dean
2009-04-17

Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize.

Article - wd:Q34391260

Welcome to Inventaire

the library of your friends and communities

learn more