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Performance of genotype imputation for low frequency and rare variants from the 1000 genomes

published in: PLOS One

date of publication: 2015-01-26

language: English

main subject: imputation

Cites articles 26

Date

Title

Authors

2013-08-09

Genotype imputation reference panel selection using maximal phylogenetic diversity

Noah Rosenberg
2013-01-16

Empirical power of very rare variants for common traits and disease: results from sanger sequencing 1998 individuals
2012-11-01

An integrated map of genetic variation from 1,092 human genomes

Gilean McVean, Gonçalo Abecasis, Richard M. Durbin, Adam Auton, Robert E Handsaker, Vineet Bafna, Klaudia Walter, Andrew G. Clark, Andrea Angius, Matthew Hurles, Gabor T Marth
2012-02-01

Genotype imputation of Metabochip SNPs using a study-specific reference panel of ~4,000 haplotypes in African Americans from the Women's Health Initiative

Eric Boerwinkle, Loic Le Marchand, Charles Kooperberg, Dana Crawford, Teri Manolio, Tara C. Matise, Kari E North, Lucia A Hindorff, Ulrike Peters
2012-07-22

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

Christian Fuchsberger, Gonçalo Abecasis
2012-02-02

The empirical power of rare variant association methods: results from sanger sequencing in 1,998 individuals

Yurii S. Aulchenko
2012-07-24

Effect of genome-wide genotyping and reference panels on rare variants imputation

Celia Greenwood
2011-11

Genotype imputation with thousands of genomes

Jonathan Marchini
2011-12-30

Performance of genotype imputations using data from the 1000 Genomes Project

Claude Bouchard, Tuomo Rankinen
2011

Performance of genotype imputation for rare variants identified in exons and flanking regions of genes

Sharon Browning, Brian L Browning, John Whittaker
2011-07-24

Comparing strategies to fine-map the association of common SNPs at chromosome 9p21 with type 2 diabetes and myocardial infarction

David Altshuler, Candace Guiducci, Stacey Gabriel, Sekar Kathiresan, Leif Groop, Mark Joseph Daly
2011-03-02

Imputation of low-frequency variants using the HapMap3 benefits from large, diverse reference sets

Jeffrey C Barrett, Katherine I. Morley
2010-12

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

Paul Scheet, Cristen J. Willer, Yun Li
2010-10-01

A map of human genome variation from population-scale sequencing

David Altshuler, Adam Auton, Richard M. Durbin, 1000 Genomes Project
2010-07

Genotype imputation for genome-wide association studies
2010-06-01

Missing heritability and strategies for finding the underlying causes of complex disease

Jason H. Moore, Evan E. Eichler, Suzanne M. Leal
2010-01-26

Rare variants create synthetic genome-wide associations
2009-10-01

Collaborative meta-analysis: associations of 150 candidate genes with osteoporosis and osteoporotic fracture

John Ioannidis, Cornelia M. van Duijn, Unnur Þorsteinsdóttir, André Uitterlinden, Nicole Soranzo, Gudmar Thorleifsson, Serkalem Demissie, David Karasik, Scott G Wilson, Yurii S. Aulchenko, Augustine Kong, Albert Hofman, Fernando Rivadeneira, Kári Stefánsson, L. Adrienne Cupples, Tim Spector, M. Carola Zillikens, Ben A Oostra, Joyce B J van Meurs, Frances M. Williams, Stuart H Ralston, Bjarni V. Halldórsson, Douglas P. Kiel, Panagiotis Deloukas, Fotini K Kavvoura, Huibert Pols, Yanhua Zhou, Karol Estrada, Najaf Amin, Benjamin H Mullin
2009-06

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

Peter Donnelly, Jonathan Marchini
2009-02-01

Genotype-imputation accuracy across worldwide human populations

Gonçalo Abecasis, John Anthony Hardy, Andrew Singleton, Noah Rosenberg
2009-02

A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals

Brian L Browning, Sharon Browning
2008-11-06

Personal genomes: The case of the missing heritability
2008-10-29

Analyses and comparison of accuracy of different genotype imputation methods

Hong-Wen Deng
2008-05-01

Bone mineral density, osteoporosis, and osteoporotic fractures: a genome-wide association study

Fernando Rivadeneira, Nicole Soranzo, Panos Deloukas, Scott G Wilson, Toby Andrew, Mario Falchi, Ana M. Valdes, Benjamin H Mullin, Albert Hofman, Tim Spector, André Uitterlinden
2007-11

Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering

Sharon Browning, Brian L Browning
2001-12-01

Are twins and singletons comparable? A study of disease-related and lifestyle characteristics in adult women

Alex MacGregor, Toby Andrew, Tim Spector

Article - wd:Q35013642

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