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Methylome diversification through changes in DNA methyltransferase sequence specificity.

autor

Yoshikazu Furuta

Mitsuyasu Hasebe

Ichizo Kobayashi

Sumio Sugano

Yutaka Suzuki

Tomoko F Shibata

Tomoaki Nishiyama

Shuji Shigenobu

publicat în: PLOS Genetics

Data de publicare: 2014-04-10

Citează articole 65

Dată

Title

Autori

2013-12-02

The complex methylome of the human gastric pathogen Helicobacter pylori

Boyke Bunk, Cathrin Spröer, Jörg Overmann, Sebastian Suerbaum
2013-08-19

Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives

Eng Guan Chua, Chin Yen Tay, Barry Marshall, Mun Fai Loke
2013-06-14

Impact of target site distribution for Type I restriction enzymes on the evolution of methicillin-resistant Staphylococcus aureus (MRSA) populations

Jodi A. Lindsay
2013-03-16

Chromosome painting in silico in a bacterial species reveals fine population structure

Kenshiro Oshima, Masahira Hattori, Ikuo Uchiyama
2013-02-28

Functional plasticity in the type IV secretion system of Helicobacter pylori

Jay V. Solnick, Timothy L. Cover, Richard M. Peek
2013

Comprehensive methylome characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at single-base resolution

Eric Schadt, Jonas Korlach, Khai Luong, Verónica Lloréns-Rico, Maria Lluch-Senar
2013-04-04

Proteome variability among Helicobacter pylori isolates clustered according to genomic methylation

Mónica Oleastro, Filipa F. Vale
2012-11-01

Mobility of DNA sequence recognition domains in DNA methyltransferases suggests epigenetics-driven adaptive evolution
2012-11-08

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

Richard Roberts, Michael C Chao, Tyson A Clark, David I Friedman, Andrew Chess, Gintaras Deikus, Eric E Schadt, Matthew Waldor
2012-10-23

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

Jonas Korlach, Khai Luong, Tyson A Clark, Andrew Kasarskis, Andrew Chess, Eric E Schadt
2012-10-02

The methylomes of six bacteria

Richard Roberts, Tyson A Clark
2012-07-20

Movement of DNA sequence recognition domains between non-orthologous proteins

Yoshikazu Furuta, Ichizo Kobayashi
2012-04-25

Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species

Yoshikazu Furuta, Naofumi Handa, Ichizo Kobayashi, Kenshiro Oshima, Masahira Hattori, Ikuo Uchiyama
2012-06-06

Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription.

Vladimir Benes, Bettina Haase, Gillian M Fraser
2011-12-05

Phasevarion mediated epigenetic gene regulation in Helicobacter pylori

Rebecca Jane Gorrell, Jason A Steen, Yogitha N Srikhanta, Terry Kwok, Michael P. Jennings, Roy M Robins-Browne, Sean Grimmond
2011-12-07

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

Richard Roberts, Tyson A Clark
2011-05-20

Transcriptional regulation by DNA methylation
2011-04-14

Domain movement within a gene: a novel evolutionary mechanism for protein diversification

Yoshikazu Furuta, Ichizo Kobayashi, Ikuo Uchiyama
2011-04-12

MEME-ChIP: motif analysis of large DNA datasets

Timothy L. Bailey, Philip Machanick
2011-01-06

Birth and death of genes linked to chromosomal inversion

Yoshikazu Furuta, Naofumi Handa, Ichizo Kobayashi, Kenshiro Oshima, Masahira Hattori, Ikuo Uchiyama
2011-05-16

Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes

Kenshiro Oshima, Masahira Hattori, Ikuo Uchiyama
2010

Differential expression analysis for sequence count data

Simon Anders, Wolfgang Huber
2010-05-16

Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer

Ralf Zimmer
2010-03-11

The primary transcriptome of the major human pathogen Helicobacter pylori

Peter F. Stadler, Jörg Vogel, Kristin Reiche, Fabien Darfeuille, Cynthia Sharma, Jörg Hackermüller, Richard Reinhardt
2010-01-12

Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements
2010-01

REBASE--a database for DNA restriction and modification: enzymes, genes and genomes

Richard Roberts
2010-05-09

Direct detection of DNA methylation during single-molecule, real-time sequencing
2010-02-17

Characterization of an N6 adenine methyltransferase from Helicobacter pylori strain 26695 which methylates adjacent adenines on the same strand

Ritesh Kumar
2009-09-08

Geographic distribution of methyltransferases of Helicobacter pylori: evidence of human host population isolation and migration

Filipa F. Vale, Francis Mégraud
2009-09-03

Helicobacter Pylori's plasticity zones are novel transposable elements

Orsolya Barabas, Awdhesh Kalia, Robert H Gilman
2009-08-25

'Nothing is permanent but change'- antigenic variation in persistent bacterial pathogens
2009-07-03

The MmeI family: type II restriction-modification enzymes that employ single-strand modification for host protection

Articol - wd:Q35144970

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