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A rooted net of life.

author

David Williams

Johann Peter Gogarten

published in: Biology Direct

date of publication: 2011-09-21

Cites articles 110

Date

Title

Authors

2011-06-30

Telling the whole story in a 10,000-genome world
2011-03-29

Molecular evolution of urea amidolyase and urea carboxylase in fungi
2011-03-25

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

Véronique Anthouard, Céline Brochier-Armanet, Julie Poulain, Béatrice Ségurens, France Denoeud, Benjamin Noel, Jean-Marc Aury, Arnaud Couloux, Corinne Da Silva, Ivan Wawrzyniak, Philippe Poirier, Olivier Jaillon, Patrick Wincker, François Artiguenave, Eric Viscogliosi, Frédéric Delbac, Christian P. Vivarès
2011-02-16

Complex evolutionary history of the Aeromonas veronii group revealed by host interaction and DNA sequence data

David Williams, Johann Peter Gogarten, Joerg Graf
2011-01-26

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

Giddy Landan, William F. Martin
2011-01-13

Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover
2011-01-21

Lateral genetic transfer and the construction of genetic exchange communities

Mark A. Ragan
2011-01-27

Kin discrimination and possible cryptic species in the social amoeba Polysphondylium violaceum

Joan E. Strassmann, David C. Queller, Sara E Kalla
2010-12-01

On the shape and fabric of human history

Russell Gray, Simon Greenhill
2010-10-01

The tree and net components of prokaryote evolution

Eugene Koonin, Yuri Wolf, Pere Puigbo
2010-07-12

Genome networks root the tree of life between prokaryotic domains

William F. Martin
2010-07-01

Save the tree of life or get lost in the woods

Philip Bourne, Ruben E. Valas
2010-05-21

Biased gene transfer mimics patterns created through shared ancestry

David Williams, Johann Peter Gogarten
2010-04-23

Diversity of 16S rRNA genes within individual prokaryotic genomes

Liying Yang, Michael Poles, Eoin L. Brodie, Karen E. Nelson
2010-03-01

Rooting the ribosomal tree of life

Johann Peter Gogarten
2010-01-18

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models

Oliver Eulenstein, Mukul S. Bansal, J. Gordon Burleigh
2010-06-07

The impact of rRNA secondary structure consideration in alignment and tree reconstruction: simulated data and a case study on the phylogeny of hexapods

Harald Letsch, Bernhard Misof
2010-12-19

Rapid evolutionary innovation during an Archaean genetic expansion

Lawrence A David, Eric J Alm
2010-05-31

Clanistics: a multi-level perspective for harvesting unrooted gene trees.

Yan Boucher, Eric Bapteste
2010-12-20

Harvesting evolutionary signals in a forest of prokaryotic gene trees

Klaus Schliep, Eric Bapteste
2010-05

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
2010-01

Acquisition of prokaryotic genes by fungal genomes

Marina Marcet-Houben, Toni Gabaldón
2009-12-01

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

Natalia N. Ivanova, Nikos C. Kyrpides, Jonathan A. Eisen, Alla Lapidus, Hans-Peter Klenk, Philip Hugenholtz, Patrick S Chain, Martin Wu, Stefan Spring, Cliff Han, Amrita Pati, Elke Lang, Jan-Fang Cheng, Iain J. Anderson, Edward M. Rubin, David Bruce, Cheryl A Kerfeld, Konstantinos Mavromatis, Lynne A. Goodwin, Rüdiger Pukall, Matt Nolan, Susan Lucas, Alex Copeland, Athanasios Lykidis, Sean D. Hooper, Victor Kunin, Sabine Gronow, Eileen Dalin
2009-12-10

Network analyses structure genetic diversity in independent genetic worlds

Eric Bapteste
2009-07-13

Trees in the web of life
2009-07-23

Phylogeny of prokaryotes: does it exist and why should we care?

Simonetta Gribaldo
2009-07-13

Search for a 'Tree of Life' in the thicket of the phylogenetic forest

Eugene Koonin, Yuri Wolf, Pere Puigbo
2009-04-24

Microbial co-habitation and lateral gene transfer: what transposases can tell us.

Nikos C. Kyrpides, Konstantinos Mavromatis, Sean D. Hooper
2009-01-01

Role of horizontal gene transfer in the evolution of plant parasitism among nematodes

Makedonka Mitreva
2009

Ancient horizontal gene transfer from bacteria enhances biosynthetic capabilities of fungi

Helge Thorsten Lumbsch
2009-01

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

Antoine Danchin, Valérie Barbe, Sophie Mangenot, Claudine Médigue, Zoé Rouy, Sophie Oztas, Carole Dossat, Meriem El Karoui, David Vallenet, Christiane Bouchier, Eduardo Rocha, Alexandra Calteau, Marie Touchon, Chantal Le Bouguénec, Olivier Tenaillon, James R Johnson, Jean-Marc Ghigo, Claire Hoede, Diard Médéric R.J., Erick Denamur, Stéphane Bonacorsi, Philippe Bidet, Stéphane Cruveiller, Benoit Vacherie, Mathilde Lescat, Xavier Nassif
2009-04-08

How to become a parasite - lessons from the genomes of nematodes.

Article - wd:Q35290567

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