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The enduring utility of continuous culturing in experimental evolution

author

Maitreya Dunham

published in: Genomics

date of publication: 2014-10-02

language: English

main subject: experimental evolution

Cites articles 67

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The functional basis of adaptive evolution in chemostats
2014-08-28

Standing genetic variation drives repeatable experimental evolution in outcrossing populations of Saccharomyces cerevisiae

Gianni Liti
2014-08-01

A low cost, customizable turbidostat for use in synthetic circuit characterization

Maitreya Dunham
2014-06-30

A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database

Ian T. Paulsen, Peter D. Karp
2014-06-26

Ex uno plures: clonal reinforcement drives evolution of a simple microbial community

Gavin Sherlock
2014-01-09

Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments
2014-07-10

Evolution of Escherichia coli to 42 °C and subsequent genetic engineering reveals adaptive mechanisms and novel mutations

Troy E Sandberg, Ali Ebrahim, Adam M. Feist
2014-03-20

The dynamics of diverse segmental amplifications in populations of Saccharomyces cerevisiae adapting to strong selection

Sara C Di Rienzi, Maitreya Dunham
2013-11-21

Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment

Gavin Sherlock
2013-10-14

The use of chemostats in microbial systems biology

Naomi Ziv
2013-09-09

A chemostat array enables the spatio-temporal analysis of the yeast proteome

Arun S Rajkumar, Ricard Delgado-Gonzalo, Sebastian Maerkl, David Shore, Felix Naef, Michael A. Unser
2013-07-21

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

Erica Sodergren, Mark J Hickman, George Weinstock, David Botstein
2013-02-23

Design and use of multiplexed chemostat arrays
2013-02-21

Building a morbidostat: an automated continuous-culture device for studying bacterial drug resistance under dynamically sustained drug inhibition

Juan M. Pedraza, Remy Chait, Roy Kishony, Adrian Veres, Erdal Toprak
2013-10-21

Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae

Jack T. Pronk, Jean-Marc Daran, Antonius J A van Maris, Bart Oud, Jurgen F Nijkamp, Dick de Ridder
2012-06-19

Parallel genetic changes and nonparallel gene-environment interactions characterize the evolution of drug resistance in yeast

Sarah Otto, Aleeza C Gerstein
2012-06-08

The multiplicity of divergence mechanisms in a single evolving population

Peter R Reeves
2012-04-05

The genomic basis of adaptive evolution in threespine sticklebacks

Kerstin Lindblad-Toh, Ewan Birney, Eric Lander, Jeremy Schmutz, Jane Grimwood, Richard M. Myers, Federica Di Palma, Timothy Howes, Felicity Jones, Evan Mauceli, Robert Nicol, Simon White, Alex A Pollen, Yingguang Frank Chan, Chris T. Amemiya
2012-03-30

Investigating natural variation in Drosophila courtship song by the evolve and resequence approach
2012-04-23

Turbidostat culture of Saccharomyces cerevisiae W303-1A under selective pressure elicited by ethanol selects for mutations in SSD1 and UTH1

Gavin Sherlock
2012-11-21

The basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth rates
2012-04-02

Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve

Gavin Sherlock, Saisubramanian Nagarajan
2012-01-01

The molecular diversity of adaptive convergence

Anthony D Long, Olivier Tenaillon, Brandon S Gaut
2011-12-18

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

Remy Chait, Roy Kishony, Adrian Veres, Erdal Toprak
2011-10-12

Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity

Hans C Bernstein
2011-04-28

Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape

Gavin Sherlock
2011-05-05

Genetic variation and the fate of beneficial mutations in asexual populations

David Botstein
2010-10-11

Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus

Susanne M Germann, Birgitte Regenberg, Michael Lisby, David Botstein
2010-10-01

Identification of aneuploidy-tolerating mutations

Angelika Amon, Noah Dephoure, Maitreya Dunham, Steven P. Gygi
2010-07-16

Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation

Peter R Reeves, Zhemin Zhou
2010-02-03

Whole-genome sequencing of a laboratory-evolved yeast strain

Carlos L Araya, Maitreya Dunham
2009-10-18

Genome evolution and adaptation in a long-term experiment with Escherichia coli

Richard Lenski

Article - wd:Q35544067

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