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Transcriptome-wide identification of adenosine-to-inosine editing using the ICE-seq method.

author

Tsutomu Suzuki

published in: Nature Protocols

date of publication: 2015-04-09

Cites articles 63

Date

Title

Authors

2014-01-09

A biochemical landscape of A-to-I RNA editing in the human brain transcriptome

Tsutomu Suzuki
2014-02-01

Sequencing depth and coverage: key considerations in genomic analyses

Andreas Heger, Chris Ponting, Nicholas E Ilott, Ian Sudbery
2013-09-25

ADAR1 regulates ARHGAP26 gene expression through RNA editing by disrupting miR-30b-3p and miR-573 binding
2013-01-01

Lack of evidence for existence of noncanonical RNA editing.

Jun Wang
2013-04-25

ADAR1 forms a complex with Dicer to promote microRNA processing and RNA-induced gene silencing
2013-02-10

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

Carrie Sougnez, Kristian Cibulskis, Gad Getz, Stacey Gabriel, Eric Lander, Matthew Meyerson, Andrey Sivachenko
2012-11

Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type I interferon signature

Paul Kasher, Elizabeth Whittaker, Tracy Briggs, Mary A O'Connell, Gillian I. Rice, Simon C Lovell, Adeline Vanderver, Elisa Fazzi, Jean-Pierre Lin, Yanick J. Crow, Roberta Battini, Enrico Bertini, Tiong Y Tan, Arvid Heiberg, Carlos A Bacino, Corinne De Laet, Àngels García-Cazorla, Magnhild Rasmussen, Evangeline Wassmer, Isabelle Desguerre, Pascale de Lonlay, William G van der Merwe, Simona Orcesi, Emma Wakeling, Gabriella M A Forte, Marcin Szynkiewicz, Ivana Olivieri, Flore Rozenberg, Grace Vassallo
2012-02-12

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

Jun Wang, Bertrand Chin-Ming Tan, Zhiyu Peng, Yu Liang
2012-03-01

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".
2012-03-01

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".

Jonathan K. Pritchard
2012-12-21

Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage

John S. Mattick, Pierre B Cattenoz, Eric Westhof
2012-11-01

An integrated map of genetic variation from 1,092 human genomes

Gilean McVean, Gonçalo Abecasis, Richard M. Durbin, Adam Auton, Robert E Handsaker, Vineet Bafna, Klaudia Walter, Andrew G. Clark, Andrea Angius, Matthew Hurles, Gabor T Marth
2012-03

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

Elaine Mardis
2012-06-28

Quantification of adenosine-to-inosine editing of microRNAs using a conventional method
2012-03-01

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome"

Claudia L Kleinman
2011-05-19

Widespread RNA and DNA sequence differences in the human transcriptome

Xiaorong Wang
2011-09-29

Accurate identification of A-to-I RNA editing in human by transcriptome sequencing

Jae-Hyung Lee, Guangdun Peng, Xinshu Xiao
2011-01-01

Biochemical identification of A-to-I RNA editing sites by the inosine chemical erasing (ICE) method.

Tsutomu Suzuki
2011-09-07

Next-generation transcriptome assembly
2011-07-07

SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Data

Tak-Wah Lam
2011-05-27

Computational methods for transcriptome annotation and quantification using RNA-seq

Cole Trapnell, Manuel Garber, Mitchell Guttman
2010-01-01

Functions and regulation of RNA editing by ADAR deaminases
2010-06-21

Adenosine-to-inosine RNA editing shapes transcriptome diversity in primates

Jasmine Jacob-Hirsch, Eviatar Nevo, Erez Y. Levanon, Eli Eisenberg, Gidi Rechavi, Ninette Amariglio, Alon Harmelin, Nurit Paz-Yaacov
2010-09-12

Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome

Tsutomu Suzuki
2010-09

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
2010-01

Sequencing technologies - the next generation
2009-09-08

Evidence for large diversity in the human transcriptome created by Alu RNA editing

Erez Y. Levanon, Eli Eisenberg, George M. Church, Gidi Rechavi
2009-09-23

Adenosine deamination in human transcripts generates novel microRNA binding sites

Debashish Bhattacharya
2009-07-15

Fast and accurate short read alignment with Burrows-Wheeler transform

Richard M. Durbin, Heng Li
2009-08-15

The Sequence Alignment/Map format and SAMtools

Richard M. Durbin, Heng Li, Gonçalo Abecasis, Jue Ruan
2009-05-01

Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing

Erez Y. Levanon, George M. Church
2009-05-01

TopHat: discovering splice junctions with RNA-Seq

Steven Salzberg, Lior Pachter, Cole Trapnell

Article - wd:Q35598003

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