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Systems approach to refining genome annotation

auteur

Bernhard Palsson

1957 -

Jennifer L Reed

gepubliceerd in: Proceedings of the National Academy of Sciences

publicatiedatum: 2006-11-06

taal: Engels

belangrijk thema: genoomannotatie

Cites articles 30

Date

Titel

Auteurs

2006

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Masaru Tomita, Takeshi Ara, Hirotada Mori
2006-03-28

A previously undescribed pathway for pyrimidine catabolism

Sydney Kustu
2006-02-01

Towards multidimensional genome annotation

Ines Thiele, Bernhard Palsson, Jennifer L Reed
2006

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

Gavin Thomas, Roy R Chaudhuri, Nicholas Thomson, David S Wishart, Hirotada Mori
2006-01-01

PCR-based tandem epitope tagging system for Escherichia coli genome engineering.

Bernhard Palsson
2005-09-19

Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation

Teresa Kwok, Isabelle Pot
2005-07-01

Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays

Hirotada Mori
2004-12-21

Exploring the diversity of complex metabolic networks

Vassily Hatzimanikatis, Linda J Broadbelt
2004-11-01

OptStrain: a computational framework for redesign of microbial production systems

Costas D. Maranas
2004-05-01

Integrating high-throughput and computational data elucidates bacterial networks

Jennifer L Reed, Bernhard Palsson
2004

Prolinks: a database of protein functional linkages derived from coevolution

David Eisenberg, Matteo Pellegrini
2004-01-15

Functional genomic hypothesis generation and experimentation by a robot scientist

Ross D. King, Douglas Kell, Christopher H Bryant
2004-01-01

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

J Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro
2004-01-01

The KEGG resource for deciphering the genome

Minoru Kanehisa, Shuichi Kawashima
2004-08-01

Filling gaps in a metabolic network using expression information.

George M. Church, Peter V Kharchenko, Dennis Vitkup
2003

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

Bernhard Palsson, Jennifer L Reed
2003-01-01

ASAP, a systematic annotation package for community analysis of genomes

Aaron Darling
2002-10-01

A monocarboxylate permease of Rhizobium leguminosarum is the first member of a new subfamily of transporters
2001-07

Phenotype microarrays for high-throughput phenotypic testing and assay of gene function
2001-05-01

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

Roger E Bumgarner
2001-09-01

Minimal reaction sets for Escherichia coli metabolism under different growth requirements and uptake environments

Costas D. Maranas
2000-06-01

Protein function in the post-genomic era

Edward Marcotte, Ioannis Xenarios, Todd O. Yeates
2000-06-06

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
1999-05-27

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

Claire M. Fraser, Craig Venter, Hamilton Othanel Smith, Jonathan Eisen, John F Heidelberg, Michelle L Gwinn, Daniel H Haft, Robert J Dodson, Steven Salzberg, Granger G Sutton, William C Nelson, Owen White, Robert Fleischmann, Karen A. Ketchum, Delwood L. Richardson, Erin Hickey, Matthew Cotton, Lisa McDonald, Joel A Malek, Karen E. Nelson, Teresa Utterback, Jeremy Peterson
1998-07-01

Sequence analysis of the GntII (subsidiary) system for gluconate metabolism reveals a novel pathway for L-idonic acid catabolism in Escherichia coli
1997-09-01

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

David J. Lipman, Webb Miller
1990-02-01

Characterization of the multiple catalytic activities of tartrate dehydrogenase
1979-07-01

The pathway for L-galactonate catabolism in Escherichia coli K-12
1978-08-01

The utilisation of D-galactonate and D-2-oxo-3-deoxygalactonate by Escherichia coli K-12. Biochemical and genetical studies
1971-05-01

Genetic and metabolic control of enzymes responsible for histidine degradation in Salmonella typhimurium. 4-imidazolone-5-propionate amidohydrolase and N-formimino-L-glutamate formiminohydrolase.

Artike - wd:Q35768707

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