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Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer.

author

Philip Jonsson

John F Thompson

Cecilia Williams

published in: Molecular Endocrinology

date of publication: 2015-10-01

Cites articles 42

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2015-07-28

Discovery, Annotation, and Functional Analysis of Long Noncoding RNAs Controlling Cell-Cycle Gene Expression and Proliferation in Breast Cancer Cells

Shrikanth S Gadad
2014-01-30

Support of a bi-faceted role of estrogen receptor β (ERβ) in ERα-positive breast cancer cells

Philip Jonsson, Cecilia Williams, Anne Katchy
2013-12-10

The role of replicates for error mitigation in next-generation sequencing

Nathan E. Lewis, Kimberly Robasky, George M. Church
2013-11-27

Coexposure to phytoestrogens and bisphenol a mimics estrogenic effects in an additive manner

Philip Jonsson, Maria Bondesson, Cecilia Williams, Karl-Werner Schramm, Jan-Åke Gustafsson, Anne Katchy
2013-11-05

Oestrogen receptors in breast cancer: basic mechanisms and clinical implications

Chin-Yo Lin, Cecilia Williams
2013-05-09

Long noncoding RNAs and the genetics of cancer

John S. Mattick, Marcel E. Dinger, Seth W Cheetham
2013-03-23

RNA sequencing of MCF-7 breast cancer cells identifies novel estrogen-responsive genes with functional estrogen receptor-binding sites in the vicinity of their transcription start sites
2013-01-31

Antisense transcript long noncoding RNA (lncRNA) HOTAIR is transcriptionally induced by estradiol
2013-11-21

Long non-coding RNA HOTAIR is an independent prognostic marker of metastasis in estrogen receptor-positive primary breast cancer

Qihua Tan, Martin J Larsen, Torben A Kruse, Mads Thomassen
2013-04-30

Primary extraosseous Ewing sarcoma of the lung in children
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Long noncoding RNAs are rarely translated in two human cell lines

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2011-11-03

Estradiol-activated estrogen receptor α does not regulate mature microRNAs in T47D breast cancer cells
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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

Loyal Goff, Magdalena J Koziol, John L. Rinn, Cole Trapnell, Aviv Regev
2011-08-30

Detection of KIAA1549-BRAF fusion transcripts in formalin-fixed paraffin-embedded pediatric low-grade gliomas

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2011-06-16

The two-pore domain potassium channel KCNK5: induction by estrogen receptor alpha and role in proliferation of breast cancer cells

Philip Jonsson, Cecilia Williams
2011-05-06

Protocol dependence of sequencing-based gene expression measurements

John F Thompson
2011-05-05

A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells

Joshua J Waterfall, Adam C. Siepel
2011-03-01

A comparison of single molecule and amplification based sequencing of cancer transcriptomes

Chandan Kumar-Sinha, John F Thompson
2010-12-01

Integrative model of genomic factors for determining binding site selection by estrogen receptor-α

Mikael Huss, Guoliang Li, Yuriy L. Orlov, Shyam Prabhakar
2010

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

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2010-12-12

FOXA1 is a key determinant of estrogen receptor function and endocrine response

Antoni Hurtado
2010-10-01

Long noncoding RNAs with enhancer-like function in human cells

Ulf Andersson Ørom, Thomas Derrien, Malte Beringer, Giovanni Bussotti, Cedric Notredame, Roderic Guigó i Serra
2010-09-01

Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers

Falk Butter, Hendrik Marks, Michiel Vermeulen, Jesper V. Olsen, Anthony A. Hyman, Christian H Eberl, Matthias Mann
2010-04-15

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

John L. Rinn, Nilay Shah, Marc van de Vijver, Pedram Argani
2009-08-10

Single-molecule sequencing of an individual human genome

Stephen Quake
2009-07-05

Quantification of the yeast transcriptome by single-molecule sequencing

John F Thompson
2009-05-29

Estrogen regulation of apoptosis: how can one hormone stimulate and inhibit?

V. Craig Jordan
2009-04-04

ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands

Simon J van Heeringen, Fred Sweep, Paul N Span, Hendrik Gerard Stunnenberg, Willem-Jan Welboren
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Marcel E. Dinger, John S. Mattick

Article - wd:Q35795043

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