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The khmer software package: enabling efficient nucleotide sequence analysis

publié dans: F1000Research

date de publication: 2015-09-25

sujet principal: logiciel, paquet

Articles cités 9

Date

Titre

Auteur·ices

2016-11-29

Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab

C. Titus Brown, Michael R Crusoe
2016-07-19

Channeling Community Contributions to Scientific Software: A Sprint Experience

C. Titus Brown, Michael R Crusoe
2014-07-25

These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure

C. Titus Brown, Jason Pell
2014-03-14

Tackling soil diversity with the assembly of large, complex metagenomes

C. Titus Brown, Janet K Jansson, Susannah G Tringe, James Tiedje, Stephanie A. Malfatti
2013-07-11

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Alexie Papanicolaou, Matthias Lieber, Matthew MacManes, Nathalie Pochet, Francesco Strozzi, Nathan T Weeks, Nir Friedman, Aviv Regev, Colin N Dewey
2012-07-30

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

C. Titus Brown, Jason Pell, James Tiedje, Adina Howe
2012-05

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

Anton Bankevich, Alexander V. Sirotkin, Alexey A. Gurevich, Sergey Nikolenko, Max A. Alekseyev, Pavel A. Pevzner
2008-05

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

Ewan Birney, Daniel R Zerbino
2008-01-09

SeqAn an efficient, generic C++ library for sequence analysis

Andreas Gogol-Döring

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