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Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections

author

Bette Korber

Christian Brander

Tanmoy Bhattacharya

Bruce D. Walker

Photini Kiepiela

David Heckerman

Philip J. R. Goulder

Senica Chetty

James Mullins

Gerald H Learn

David C. Nickle

published in: Journal of Virology

date of publication: 2007-02-21

language: English

main subject: South Africa

Cites articles 58

Date

Title

Authors

2007-03-01

Founder effects in the assessment of HIV polymorphisms and HLA allele associations

Tanmoy Bhattacharya, Brian Foley, Benjamin H McMahon, Christian Brander, Bruce F. Walker, Bette Korber, Simon A. Mallal, James Mullins, Joshua Herbeck, Gerald H Learn, David C. Nickle, David Heckerman, Karina Yusim, Nicole Frahm, Toshiyuki Miura, Brian Gaschen
2006-07-01

Frequency of HIV type 1 dual infection and HIV diversity: analysis of low- and high-risk populations in Mbeya Region, Tanzania

Miguel A. Arroyo, Michael Hoelscher, Leonard Maboko, Deborah L. Birx, Francine E McCutchan, Karl-Heinz Herbinger
2006-05-15

Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes.

Bette Korber, Christian Brander, Bruce D. Walker, Photini Kiepiela, James Mullins, Gerald H Learn, Philip J. R. Goulder
2006-02-01

Full-length genome analysis of human immunodeficiency virus type 1 subtype C in Brazil

Sabri Saeed Sanabani, Luiz Mario Janini, Ester Sabino
2006-05-01

A dual superinfection and recombination within HIV-1 subtype B 12 years after primoinfection

Cecilio Lopez-Galindez
2005-09-01

In-depth analysis of a heterosexually acquired human immunodeficiency virus type 1 superinfection: evolution, temporal fluctuation, and intercompartment dynamics from the seronegative window period through 30 months postinfection

Deborah L. Birx
2005-08-02

An automated genotyping system for analysis of HIV-1 and other microbial sequences

Anne-Mieke Vandamme, Túlio de Oliveira, Mika Salminen, Ricardo Camacho, Estrelita Janse van Rensburg
2005-08-01

Evidence for frequent reinfection with human immunodeficiency virus type 1 of a different subtype

Julie Overbaugh
2005-07-01

In-depth, longitudinal analysis of viral quasispecies from an individual triply infected with late-stage human immunodeficiency virus type 1, using a multiple PCR primer approach

Deborah L. Birx
2005-02-01

Frequency of HIV-1 dual subtype infections, including intersubtype superinfections, among injection drug users in Bangkok, Thailand

Jordan W Tappero
2005-01-01

Human immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: compartmentalization and intrapatient recombination

Brian Foley, Kathryn M. Anastos
2005-01-01

HIV-1 intra-subtype superinfection rates: estimates using a structured coalescent with recombination

Bette Korber
2004-11-01

Molecular clock-like evolution of human immunodeficiency virus type 1.

Daniel Shriner, James Mullins, Gerald H Learn, David C. Nickle
2004-10-01

Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1.

Grace P. McCormack, Amelia Crampin, James O. McInerney, Judith Glynn
2004-08-01

Pervasive genomic recombination of HIV-1 in vivo

Daniel Shriner, Allen Gerard Rodrigo, James Mullins, David C. Nickle
2004-02-21

Dual HIV-1 infection associated with rapid disease progression

Lawrence Corey, Shan-Lu Liu, Geoffrey S. Gottlieb, Salim Abdool Karim, Carolyn Williamson, Joseph B Margolick, James Mullins, Gerald H Learn, David C. Nickle
2004-12-01

Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA.

Christian Brander, Bette Korber, Alasdair Leslie, Paul Klenerman, Bruce D. Walker, Marcus Altfeld, Photini Kiepiela, Hoosen Coovadia, Philip J. R. Goulder, Todd M Allen, Senica Chetty, Simon A. Mallal, James Mullins, Christina F Thobakgale-Tshabalala, Marylyn Addo, Corey Moore, Katja J Pfafferott, Danni Ramduth, Cheryl L Day, Isobella Honeyborne, Prinisha Rathnavalu, James J Szinger
2004-09-01

No evidence for recombination between HIV type 1 and HIV type 2 within the envelope region in dually seropositive individuals from Senegal

Geoffrey S. Gottlieb, James Mullins, Nancy B Kiviat
2004-09-01

Incidence of HIV superinfection following primary infection

Davey Smith, Susan J Little
2004-08-01

Persistence of multidrug-resistant HIV-1 in primary infection leading to superinfection.

Mark Wainberg
2004-07-01

HIV-1 co/super-infection in intravenous drug users

Matthias Cavassini, Swiss HIV Cohort Study, Sabine Yerly, Amalio Telenti
2004-01-01

Recombination following superinfection by HIV-1.

Omu Anzala, Joshua Kimani, Rupert Kaul, Frank Plummer, Sarah Rowland-Jones, Sean M Philpott, Barbara Weiser, Carla Kuiken, Guowei Fang, Job J. Bwayo, Binshan Shi
2004-10

Incidence of HIV‐1 Dual Infection and Its Association with Increased Viral Load Set Point in a Cohort of HIV‐1 Subtype C–Infected Female Sex Workers

Salim Abdool Karim, Lynn Morris, Carolyn Williamson, Gita Ramjee, Clive M. Gray, Cathal Seoighe, Cecilia Rademeyer
2003-11-01

Recombination of HIV type 1C (C'/C") in Ethiopia: possible link of EthHIV-1C' to subtype C sequences from the high-prevalence epidemics in India and Southern Africa

Georgios Pollakis, Jaap Goudsmit, Almaz Abebe, Aletta Kliphuis, Abebaw Mengistu Yohannes, Bitew Fisseha, Belete Tegbaru, Girma Tesfaye, Hailu Negassa
2003-10

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
2003-09-01

Evolution of R5 and X4 human immunodeficiency virus type 1 gag sequences in vivo: evidence for recombination

Michael Worobey, Hanneke Schuitemaker
2003-08-05

Statistical significance for genomewide studies

Robert Tibshirani, John D. Storey
2003-02-01

Molecular characteristics of human immunodeficiency virus type 1 subtype C viruses from KwaZulu-Natal, South Africa: implications for vaccine and antiretroviral control strategies

Karen Bishop, Susan Engelbrecht
2003-12-01

A cluster of HIV type 1 subtype C sequences from Ethiopia, observed in full genome analysis, is not sustained in subgenomic regions.

Guido Ferrari, Deborah L. Birx, Francine E McCutchan
2003-07-01

Molecular epidemiology of dual HIV-1/HIV-2 seropositive adults from Senegal, West Africa.

Geoffrey S. Gottlieb, James Mullins, Nancy B Kiviat
2003-05-01

Clade B HIV-1 superinfection with wild-type virus after primary infection with drug-resistant clade B virus

Christos J Petropoulos, Susan J Little
2003-01-01

A specific subtype C of human immunodeficiency virus type 1 circulates in Brazil.

Amilcar Tanuri, Ester Sabino, Mariza Gonçalves Morgado, Rodrigo Brindeiro, Túlio de Oliveira

Article - wd:Q35857346

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