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aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events

autore

Asa Ben-Hur

pubblicato in: PLOS ONE

data di pubblicazione: 2016-08-25

lingua: inglese

Cita articoli 30

Data

Titolo

Autori

2015-03-01

AEF1/MPR25 is implicated in RNA editing of plastid atpF and mitochondrial nad5, and also promotes atpF splicing in Arabidopsis and rice

Peter Kindgren, Catherine Colas des Francs-Small, Tomohiko Kazama, Sandra Tanz, Ian Small
2014-05-08

Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling

Jacob M Tome
2014-01

Activities at the Universal Protein Resource (UniProt)

Michel Schneider, Sandra Orchard, Catherine Rivoire, Emmanuel Boutet, Ursula Hinz, Michael Tognolli, Ioannis Xenarios, Lucila Aimo
2014-11-06

Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing

Ian Small
2014-08-28

The pentatricopeptide repeat protein MEF26 participates in RNA editing in mitochondrial cox3 and nad4 transcripts
2013-06-06

Improved computational target site prediction for pentatricopeptide repeat RNA editing factors
2013-03-05

Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants

Takashi Hirayama
2013-03-21

Arabidopsis chloroplast quantitative editotype.
2012-08-16

A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins

Charles S Bond, Ian Small
2012-08-03

PRD: A protein-RNA interaction database
2012-11-09

De novo prediction of RNA-protein interactions from sequence information
2011-12-22

Predicting RNA-protein interactions using only sequence information

Drena Dobbs, Vasant Honavar
2011-07

HMMER web server: interactive sequence similarity searching

Sean Eddy, Robert D. Finn, Jody Clements
2011-04-01

In silico characterization and prediction of global protein-mRNA interactions in yeast

Jürg Bähler, Vera Pancaldi
2011-01-10

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution

Charles S Bond, Ian Small
2011-01

PRIDB: a Protein-RNA interface database

Vasant Honavar, Charles Zheng, Rasna R. Walia, Drena Dobbs
2011-06-01

Predicting protein associations with long noncoding RNAs.

Gian Gaetano Tartaglia
2010-12-20

Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein
2008-10-28

Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system

Patrick O. Brown, Daniel Herschlag, André P. Gerber, Daniel P Riordan
2008-03-13

RNA-binding proteins and post-transcriptional gene regulation
2007-01-03

TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences

Johannes Söding, Andrei N. Lupas
2006-07-01

ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins

Amos Bairoch, Elisabeth Gasteiger, Edouard de Castro, Petra S Langendijk-Genevaux, Christian J A Sigrist, Alexandre Gattiker, Nicolas Hulo, Virginie Bulliard
2006-01-01

NPInter: the noncoding RNAs and protein related biomacromolecules interaction database

Tao Wu, Yong Zhang, Runsheng Chen
2006-02-17

Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing

Letian Chen
2005-01-01

A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts

Masao Tasaka, Toshiharu Shikanai
2004-07-21

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

José M Gualberto, Nemo Peeters, Ian Small
2003-01-01

GenBank

David L. Wheeler, Dennis A. Benson, James Ostell, Ilene Karsch-Mizrachi, David J. Lipman
2002-01-01

ScanProsite: a reference implementation of a PROSITE scanning tool.

Elisabeth Gasteiger, Amos Bairoch, Alexandre Gattiker
2000-02-01

The PPR motif - a TPR-related motif prevalent in plant organellar proteins
1992-05-01

PROSITE: a dictionary of sites and patterns in proteins

Amos Bairoch

Articolo - wd:Q36113001

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