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Theory of prokaryotic genome evolution

author

Eugene Koonin

1956 -

Yuri Wolf

Itamar Sela

published in: Proceedings of the National Academy of Sciences of the United States of America

date of publication: 2016-10-04

language: English

Cites articles 36

Date

Title

Authors

2016-11-07

Two fundamentally different classes of microbial genes

Eugene Koonin, Yuri Wolf, Kira Makarova, Alexander E Lobkovsky
2015-11-02

The bioenergetic costs of a gene

Georgi K Marinov
2014-11-26

Expanded microbial genome coverage and improved protein family annotation in the COG database

Michael Y. Galperin, Eugene Koonin, Yuri Wolf, Kira Makarova
2014-10-27

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

Nikos C. Kyrpides, Tbk Reddy
2014-08-21

Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes

Eugene Koonin, Yuri Wolf, Alexander E Lobkovsky, David Møbjerg Kristensen, Pere Puigbo
2014-11-20

Formal properties of the probability of fixation: identities, inequalities and approximations.

Joshua B. Plotkin
2013-06-25

Genome reduction as the dominant mode of evolution

Eugene Koonin, Yuri Wolf
2013-04-01

Comparative genomics of defense systems in archaea and bacteria

Eugene Koonin
2013-01-01

Natural selection for operons depends on genome size

Eduardo Rocha
2012-01-01

Population diversity of ORFan genes in Escherichia coli

Arlin Stoltzfus
2010-02-09

Interplay of heritage and habitat in the distribution of bacterial signal transduction systems

Michael Y. Galperin, Eugene Kolker
2009-06-27

Deletional bias across the three domains of life

Chih-Horng Kuo, Howard Ochman
2009-10-26

The dynamics of adaptation on correlated fitness landscapes

Joshua B. Plotkin
2009-05-29

Toolbox model of evolution of prokaryotic metabolic networks and their regulation

Sergei Maslov, Kim Sneppen, Tin Yau Pang
2009-06

Scaling laws in functional genome content across prokaryotic clades and lifestyles

Nacho Molina, Erik van Nimwegen
2008-12

The population genetics of dN/dS

Joshua B. Plotkin
2008-10-31

Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes

Eugene Koonin, Yuri Wolf, Pavel S Novichkov, Inna Dubchak
2008-12-01

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

Eugene Koonin, Yuri Wolf
2008-09-26

Evolution of genome architecture

Eugene Koonin
2008-10-09

ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes

Eugene Koonin, Yuri Wolf, Pavel S Novichkov, Inna Dubchak
2008-08-01

Random walk models in biology

Edward A. Codling, Michael Plank
2007-05-15

The frailty of adaptive hypotheses for the origins of organismal complexity

Michael Lynch
2006-01-01

Streamlining and simplification of microbial genome architecture
2005-06-24

The application of statistical physics to evolutionary biology
2005-06-01

Operon formation is driven by co-regulation and not by horizontal gene transfer

Adam Arkin, Eric J Alm
2005-11-09

The origins of eukaryotic gene structure
2004-06-01

Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli

Vincent Daubin
2004-02-18

Trends between gene content and genome size in prokaryotic species with larger genomes

James M. Tiedje, Konstantinos T. Konstantinidis
2004-03-01

A non-adaptationist perspective on evolution of genomic complexity or the continued dethroning of man.

Eugene Koonin
2003-11-01

Comparative genomics, minimal gene-sets and the last universal common ancestor

Eugene Koonin
2003-11-21

The origins of genome complexity
2003-09-01

Scaling laws in the functional content of genomes

Erik van Nimwegen

Article - wd:Q36153034

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