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Screening for interaction effects in gene expression data

author

Hugues Aschard

1978 -

published in: PLOS One

date of publication: 2017-03-16

language: English

Cites articles 47

Date

Title

Authors

2016-07-07

A perspective on interaction effects in genetic association studies
2015-05-18

Robust Linear Models for Cis-eQTL Analysis

Cecilia Lindgren, Chris Holmes
2014-12-01

Correcting systematic inflation in genetic association tests that consider interaction effects: application to a genome-wide association study of posttraumatic stress disorder

Kerry J. Ressler, Lynn Almli, Bekh Bradley, Elisabeth Binder, Karen Conneely
2014-10-14

Genetic control of gene expression at novel and established chronic obstructive pulmonary disease loci

John Quackenbush, Ruth Tal-Singer
2014-04-25

Genetic interactions affecting human gene expression identified by variance association mapping

Tuuli Lappalainen, Richard M. Durbin, Andrew A Brown, Ana Viñuela, Alfonso Buil, Kerrin S. Small, Tim Spector
2014-02-26

RETRACTED ARTICLE: Detection and replication of epistasis influencing transcription in humans

Tõnu Esko, Anjali K. Henders, Jian Yang, Nick Martin, Lude Franke, Peter M. Visscher, Andres Metspalu, Harm-Jan Westra, Joseph E. Powell, Allan F McRae, Grant W. Montgomery, Gibran Hemani
2014-10-01

Hemani et al. reply

Tõnu Esko, Anjali K. Henders, Jian Yang, Nick Martin, Lude Franke, Peter M. Visscher, Andres Metspalu, Gibran Hemani, Grant W. Montgomery
2014-10-01

Another explanation for apparent epistasis

David Melzer, Tim Frayling, Michael N Weedon, Luigi Ferrucci, Dena G. Hernandez
2013-09-15

Transcriptome and genome sequencing uncovers functional variation in humans

Tuuli Lappalainen, Roderic Guigó i Serra, Ann-Christine Syvänen, Gert-Jan van Ommen, Esther Lizano, Jean Monlong, Gabrielle Bertier, Leena Helena Kilpinen-Barrett, Natalja Kurbatova, Halit Ongen, Pedro G. Ferreira, Sergi Beltran, Michael Sammeth, Oliver Stegle, Matti Pirinen, Alvis Brazma, Philip Rosenstiel, Paul Flicek, Ángel Carracedo, Stilianos Antonarakis, Thomas Meitinger, Xavier Estivill i Pallejà, Hans Lehrach, Mark McCarthy, Marc Friedlander, Peter A.C. 't Hoen, Mar Gonzalez-Porta, Peter Donnelly, Robert Häsler, Stephen Montgomery, Daniel G. MacArthur, Stefan Schreiber, Emmanouil Dermitzakis, Paolo Ribeca, Marc Sultan, Marta Gut
2013-08-08

Software for computing and annotating genomic ranges

Wolfgang Huber, Robert Gentleman
2013-04-11

The impact of quantile and rank normalization procedures on the testing power of gene differential expression analysis
2013-03-19

A nonparametric test to detect quantitative trait loci where the phenotypic distribution differs by genotypes

Noah Zaitlen, Rulla M Tamimi, Peter Kraft, Sara Lindstroem
2012-01-01

Effect of normalization on statistical and biological interpretation of gene expression profiles
2012-07-04

Challenges and opportunities in genome-wide environmental interaction (GWEI) studies

Kristel Van Steen, Eric J Duell, Nilanjan Chatterjee, Tasha E Fingerlin, Peter Kraft
2012-04-06

Matrix eQTL: ultra fast eQTL analysis via large matrix operations
2012-02-16

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

Richard M. Durbin, Matias Piipari, Oliver Stegle, Leopold Parts
2012-01-31

Dissecting the regulatory architecture of gene expression QTLs

Jean-Baptiste Veyrieras, Roger Pique-Regi, Gregory E. Crawford, Daniel J Gaffney, Jonathan K. Pritchard
2012-01-27

Removing technical variability in RNA-seq data using conditional quantile normalization

Kasper D. Hansen, Zhijin Wu, Rafael Irizarry
2012-01-05

Joint modelling of confounding factors and prominent genetic regulators provides increased accuracy in genetical genomics studies

Oliver Stegle, Neil D. Lawrence
2011-12-22

Gene-environment interactions in genome-wide association studies: a comparative study of tests applied to empirical studies of type 2 diabetes

Frank Hu, Nilanjan Chatterjee, Lu Qi, Eric J Tchetgen Tchetgen, Marilyn C Cornelis, Liming Liang, Peter Kraft
2011-11-11

A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13.

Mateusz Siedlinski, Augusto A Litonjua, Jørgen Vestbo, William MacNee, Ruth Tal-Singer, Emiel F M Wouters, John E Hokanson, Blanca E Himes, Barbara J Klanderman, Xiangyang Kong
2011-10-01

On the use of log-transformation vs. nonlinear regression for analyzing biological power laws

Xiao Xiao, Ethan P. White, Mevin B. Hooten
2011

Genetics of sputum gene expression in chronic obstructive pulmonary disease

Weiliang Qiu, Augusto A Litonjua, Ruth Tal-Singer, Edwin K Silverman
2011-08-17

A systematic eQTL study of cis-trans epistasis in 210 HapMap individuals

Markus M Nöthen
2011-05-12

Behavior of QQ-plots and genomic control in studies of gene-environment interaction

Thomas Lumley
2011-03-01

On the robustness of tests of genetic associations incorporating gene-environment interaction when the environmental exposure is misspecified.

Eric Tchetgen Tchetgen
2010-10-29

Genome-wide association analysis of body mass in chronic obstructive pulmonary disease

Xiangyang Kong, Elizabeth A Regan, Barbara J Klanderman, Edwin K Silverman
2010-09-14

Tackling the widespread and critical impact of batch effects in high-throughput data

Jeffrey T. Leek, W Evan Johnson, Rafael Irizarry
2010-06-17

On the use of variance per genotype as a tool to identify quantitative trait interaction effects: a report from the Women's Genome Health Study

Paul Ridker, Daniel I Chasman, Nancy R. Cook
2010-03-16

ProbABEL package for genome-wide association analysis of imputed data

Yurii S. Aulchenko, Cornelia M. van Duijn, Maksim Struchalin
2010-01-01

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Davis J McCarthy, Mark D. Robinson, Gordon K Smyth
2009-11-30

Identifying gene interaction enrichment for gene expression data

Hong-Wen Deng

Article - wd:Q36310868

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