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Accurate SAXS profile computation and its assessment by contrast variation experiments

author

Dina Schneidman-Duhovny

Andrej Šali

1963 -

Michal Hammel

John A. Tainer

published in: Biophysical Journal

date of publication: 2013-08-01

language: English

Cites articles 61

Date

Title

Authors

2013-06-01

Comprehensive macromolecular conformations mapped by quantitative SAXS analyses

Michal Hammel, John A. Tainer, Cynthia T McMurray, Greg L Hura, Robert P Rambo, Kevin Dyer
2013-04-01

Accurate assessment of mass, models and resolution by small-angle scattering

John A. Tainer
2013-03-11

Super-resolution in solution X-ray scattering and its applications to structural systems biology

John A. Tainer
2013-02-14

Insights into FlaI functions in archaeal motor assembly and motility from structures, conformations, and genetics

Sonja-Verena Albers, Abhrajyoti Ghosh, John A. Tainer
2013-01-01

Fast-SAXS-pro: a unified approach to computing SAXS profiles of DNA, RNA, protein, and their complexes.

Sichun Yang
2012-07-16

Integrative structural modeling with small angle X-ray scattering profiles

Dina Schneidman-Duhovny, Andrej Šali, Seung Joong Kim
2012-06-18

A hierarchical algorithm for fast Debye summation with applications to small angle scattering
2012-05-26

Validation of macromolecular flexibility in solution by small-angle X-ray scattering (SAXS).

Michal Hammel
2012-06-01

Structures of inactive retinoblastoma protein reveal multiple mechanisms for cell cycle control
2012-01

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

Andrej Šali, Dina Schneidman-Duhovny, Ben S. Webb, Javier A Velázquez-Muriel, Elina Tjioe
2012-02-09

Computation of small-angle scattering profiles with three-dimensional Zernike polynomials.

Richard J Morris
2011-12-01

Improving protein template recognition by using small-angle x-ray scattering profiles
2011-11-04

Atg8 Transfer from Atg7 to Atg3: A Distinctive E1-E2 Architecture and Mechanism in the Autophagy Pathway

Michal Hammel, Stephen Tait, Douglas R. Green
2011-10-01

Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scattering

Tobin R. Sosnick, Karl Freed
2011-09-22

UCSF Chimera, MODELLER, and IMP: an integrated modeling system

Thomas E Ferrin, Andrej Šali, Dina Schneidman-Duhovny, Ben S. Webb, Elaine C Meng, Eric F Pettersen, Conrad C Huang
2011-09-27

Accessing protein conformational ensembles using room-temperature X-ray crystallography

Nathaniel Echols, Henry van den Bedem, James S Fraser
2011-09-16

XRCC4 Protein Interactions with XRCC4-like Factor (XLF) Create an Extended Grooved Scaffold for DNA Ligation and Double Strand Break Repair

Michal Hammel, John A. Tainer
2011-03-27

ABC ATPase signature helices in Rad50 link nucleotide state to Mre11 interface for DNA repair

Gabriel Moncalian, Oliver Limbo, Michal Hammel, John A. Tainer
2011-03-21

The immunoglobulin-like domains 1 and 2 of the protein tyrosine phosphatase LAR adopt an unusual horseshoe-like conformation

Michal Hammel, Samuel Bouyain
2011-01-01

Modeling of proteins and their assemblies with the integrative modeling platform.

Andrej Šali, Dina Schneidman-Duhovny, Javier A Velázquez-Muriel, Elina Tjioe, Seung Joong Kim
2011-06-10

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models

Sebastian Doniach, Patrice Koehl, Henri Orland
2010-11-01

XLF regulates filament architecture of the XRCC4·ligase IV complex

Michal Hammel, John A. Tainer, Susan P Lees-Miller, Shujuan Fang
2010-11-01

Improved fitting of solution X-ray scattering data to macromolecular structures and structural ensembles by explicit water modeling

Alexander Grishaev, Ad Bax
2010-09-27

Allosteric inhibition of complement function by a staphylococcal immune evasion protein

Daniel Ricklin, John D. Lambris, Brian V Geisbrecht, Michal Hammel, Apostolia Tzekou, Brandon L Garcia, William J McWhorter, Georgia Sfyroera
2010-08-18

Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models

Thomas Hamelryck, Jesper Ferkinghoff-Borg
2010-07-27

Human DNA ligase III recognizes DNA ends by dynamic switching between two DNA-bound states

Michal Hammel, Tom Ellenberger, John A. Tainer
2010-05-27

FoXS: a web server for rapid computation and fitting of SAXS profiles

Dina Schneidman-Duhovny, Andrej Šali, Michal Hammel
2010-05-01

Structural dynamics in DNA damage signaling and repair

John A. Tainer
2010-04-01

Small-angle scattering for structural biology--expanding the frontier while avoiding the pitfalls.

David A. Jacques, Jill Trewhella
2010-01-27

Improving small-angle X-ray scattering data for structural analyses of the RNA world

John A. Tainer
2010-01-22

Bridging the solution divide: comprehensive structural analyses of dynamic RNA, DNA, and protein assemblies by small-angle X-ray scattering

John A. Tainer
2010-08-01

Changes in small-angle X-ray scattering parameters observed upon binding of ligand to rabbit muscle pyruvate kinase are not correlated with allosteric transitions

Jill Trewhella

Article - wd:Q37117438

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