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Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression

författare

Catherine Sautès-Fridman

Aurélien de Reyniès

Wolf Hervé Fridman

1945 -

Florent Petitprez

1990 -

Pierre Laurent-Puig

Etienne Becht

publicerad i: Genome Biology

utgivningsår: 2016-10-20

Refererar artiklar 27

Datum

Titel

Författare

2016-05-30

Landscape of tumor-infiltrating T cell repertoire of human cancers

Nir Hacohen, Toni K Choueiri, F Stephen Hodi, Sabina Signoretti
2016-01-29

Immune Contexture, Immunoscore, and Malignant Cell Molecular Subgroups for Prognostic and Theranostic Classifications of Cancers

Pierre Laurent-Puig, Marie-Caroline Dieu-Nosjean, Catherine Sautès-Fridman, Aurélien de Reyniès, Wolf Hervé Fridman, Jessica Zucman-Rossi, Nicolas A Giraldo, Etienne Becht
2016-06-22

Genomic Analysis of Immune Cell Infiltrates Across 11 Tumor Types

Jonathan S. Serody, Benjamin G Vincent, Charles M. Perou
2015-03-30

Robust enumeration of cell subsets from tissue expression profiles

Aaron M. Newman, Michael Green, Andrew J Gentles, A Alizadeh, Chih Long Liu, Maximilian Diehn
2015-02-23

Stromal contribution to the colorectal cancer transcriptome

Claudio Isella, Andrea Terrasi, Consalvo Petti, Alfredo Mellano, Zsolt Fekete, Enzo Medico, Andrea Bertotti, Paola Cassoni, Rebecca Senetta, Adele Cassenti
2015-11-30

Profiling tissue-resident T cell repertoires by RNA sequencing

Robert A. Holt
2015-02-16

Orchestration and Prognostic Significance of Immune Checkpoints in the Microenvironment of Primary and Metastatic Renal Cell Cancer

Wolf Hervé Fridman, Catherine Sautès-Fridman, Marie-Caroline Dieu-Nosjean, Diane Damotte, Arnaud Méjean, Franck Pagès, Nicolas A Giraldo, Etienne Becht, Gordon J. Freeman
2015-02-23

Stromal gene expression defines poor-prognosis subtypes in colorectal cancer.

Antoni Riera, Camille Stephan-Otto Attolini, Eduard Batlle, Antoni Berenguer-Llergo, Elisa Espinet, Xavier Hernando-Momblona, Marta Sevillano, Sergio Palomo-Ponce, Daniele V. F. Tauriello, Carme Cortina, Elena Sancho
2014-10-01

Association of PD-1, PD-1 ligands, and other features of the tumor immune microenvironment with response to anti-PD-1 therapy
2014-02-01

Sequencing depth and coverage: key considerations in genomic analyses

Andreas Heger, Chris Ponting, Nicholas E Ilott, Ian Sudbery
2014-04-01

Presence of B cells in tertiary lymphoid structures is associated with a protective immunity in patients with lung cancer

Jeremy Goc, Alice Lepelley, Sandrine Katsahian, Isabelle Cremer, Wolf Hervé Fridman, Catherine Sautès-Fridman, Etienne Becht, Sacha Gnjatic
2013-10-19

Computational deconvolution: extracting cell type-specific information from heterogeneous samples
2013-01-01

Inferring tumour purity and stromal and immune cell admixture from expression data

Gad Getz, Hoon Kim, Kosuke Yoshihara, Gordon B. Mills
2013-02-21

DeconRNASeq: a statistical framework for deconvolution of heterogeneous tissue samples based on mRNA-Seq data
2013-12-23

Dendritic cells in tumor-associated tertiary lymphoid structures signal a Th1 cytotoxic immune contexture and license the positive prognostic value of infiltrating CD8+ T cells

Isabelle Cremer, Wolf Hervé Fridman, Catherine Sautès-Fridman, Diane Damotte, Marie-Caroline Dieu-Nosjean, Jeremy Goc, Etienne Becht
2013-10-01

Spatiotemporal dynamics of intratumoral immune cells reveal the immune landscape in human cancer.

Marie Tosolini, Anna C Obenauf, Wolf Hervé Fridman, Michael R. Speicher, Jérôme Galon, Patrick Bruneval, Bernhard Mlecnik, Zlatko Trajanoski, Gabriela Bindea, Helen K Angell, Amos Kirilovsky, Franck Pagès, Lucie Lafontaine, Tessa Fredriksen, Maximilian Waldner
2012-12-20

Molecular pathways: involvement of immune pathways in the therapeutic response and outcome in breast cancer

Fabrice André, Maria Vittoria Dieci, Giuseppe Curigliano, Carsten Denkert, Sherene Loi
2012-03-13

Fold change and p-value cutoffs significantly alter microarray interpretations
2012-03-15

The immune contexture in human tumours: impact on clinical outcome

Jérôme Galon
2011-06-01

Leukocyte complexity predicts breast cancer survival and functionally regulates response to chemotherapy

Brian Ruffell, Stephen F Madden, William M Gallagher, Brian West, Hope Rugo
2010-04-01

A global map of human gene expression

Alvis Brazma, Angela Goncalves, Margus Lukk, Esko Ukkonen, Wolfgang Huber, Helen Parkinson
2010-01-22

Frozen robust multiarray analysis (fRMA).

Rafael Irizarry
2008-02-20

A new perspective on transcriptional system regulation (TSR): towards TSR profiling

Rudolf Fehrmann, Robert Hofstra
2006-09-29

Type, density, and location of immune cells within human colorectal tumors predict clinical outcome

Jérôme Galon, Patrick Bruneval, Wolf Hervé Fridman, Franck Pagès, Marie Tosolini, Fatima Sanchez-Cabo, Bernhard Mlecnik, Zlatko Trajanoski, Amos Kirilovsky, Anne Coléno-Costes, Christine Lagorce-Pagès
2005-12-01

Effector memory T cells, early metastasis, and survival in colorectal cancer

Diane Damotte, Jérôme Galon, Wolf Hervé Fridman, Franck Pagès, Fatima Sanchez-Cabo, Patrick Bruneval, Bernhard Mlecnik, Zlatko Trajanoski, Amos Kirilovsky, Anne Coléno-Costes, Tchao Meatchi
2001-01-01

Separation of samples into their constituents using gene expression data
1973-11

Culture of human endothelial cells derived from umbilical veins. Identification by morphologic and immunologic criteria

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