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Nucleosomal arrangement affects single-molecule transcription dynamics.

author

Jaeoh Shin

Lucas Farnung

Stephan Grill

1974 -

Patrick Cramer

1969 -

published in: Proceedings of the National Academy of Sciences of the United States of America

date of publication: 2016-10-24

language: English

Cites articles 35

Date

Title

Authors

2016-02-29

Mechanisms of backtrack recovery by RNA polymerases I and II.

Marcus Jahnel, Eric A Galburt, Stephan Grill, Ana Lisica, Patrick Cramer
2015-07-01

Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble

Craig D. Kaplan, Aina E Cohen, Filippo Pullara, Michael Trakselis
2014-02-18

Transcription factors IIS and IIF enhance transcription efficiency by differentially modifying RNA polymerase pausing dynamics

Yves Coello, Toyotaka Ishibashi, Carlos Bustamante, Troy A Lionberger
2013-09-24

Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism

Toyotaka Ishibashi, Maria L Kireeva, Carlos Bustamante
2013-08-01

The molecular yo-yo method: live jump detection improves throughput of single-molecule force spectroscopy for out-of-equilibrium transitions

Maria Kamenetska
2012-05-21

Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases

Toyotaka Ishibashi, Carlos Bustamante
2012-04-09

Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II.

Craig D. Kaplan, Roger D. Kornberg, Steven M. Block, Robert Landick
2012-11-01

Nucleosomal elements that control the topography of the barrier to transcription

Carlos Bustamante, Toyotaka Ishibashi
2012-06-01

A map of nucleosome positions in yeast at base-pair resolution
2011-04-06

Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity

Patrick Cramer
2010-04

Features and development of Coot

Bernhard Lohkamp, Kevin Cowtan
2009-07-01

Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II

Courtney Hodges, Carlos Bustamante
2009-06-01

Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA

Alan Cheung, Patrick Cramer
2009-05-06

Single molecule transcription elongation

Eric A Galburt, Carlos Bustamante, Stephan Grill
2009-03-01

The origin of short transcriptional pauses

Eric A Galburt, Stephan Grill, Martin Depken
2008-09-12

Preferentially quantized linker DNA lengths in Saccharomyces cerevisiae

Eran Segal
2007-03-14

Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner.

Carlos Bustamante, Eric A Galburt, Eva Nogales, Stephan Grill
2006-10-16

Effect of force on mononucleosomal dynamics

Carlos Bustamante
2006-11-01

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II

Yury Polikanov
2005-11-04

Sequence heterogeneity and the dynamics of molecular motors
2004-01-01

Reconstitution of nucleosome core particles from recombinant histones and DNA.

Karolin Luger
2003-01-01

Engineering of elongation complexes of bacterial and yeast RNA polymerases.

Maria L Kireeva
2003-01-01

Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae

Maria L Kireeva
2003-11-01

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.

Keir C. Neuman, Steven M. Block, Robert Landick, Jeff Gelles
2002-10-07

Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior

Michelle D. Wang
2002-03-01

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription

Maria L Kireeva
1999-01-01

Expression and purification of recombinant histones and nucleosome reconstitution

Karolin Luger
1998-02-01

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
1997-09-18

Crystal structure of the nucleosome core particle at 2.8 Å resolution

Karolin Luger
1995-12

Stretching DNA

Eric D. Siggia
1991-04-01

Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.
1986-07-01

The salt dependence of chicken and yeast chromatin structure. Effects on internucleosomal organization and relation to active chromatin

Article - wd:Q37417902

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