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Sharing information to reconstruct patient-specific pathways in heterogeneous diseases

autor

Andrea Pagnani

1970 -

Ernest Fraenkel

Anthony Gitter

Riccardo Zecchina

1963 -

publicat în: Pacific Symposium on Biocomputing

Data de publicare: 2014-01-01

Citează articole 33

Dată

Title

Autori

2013-08-27

Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE).

David Haussler, Mario Niepel, Peter K. Sorger
2013-07-01

Learning subgroup-specific regulatory interactions and regulator independence with PARADIGM.

Stephen Benz
2013-07-01

Identifying proteins controlling key disease signaling pathways

Ziv Bar-Joseph, Anthony Gitter
2013-05-23

Simultaneous identification of multiple driver pathways in cancer

Roded Sharan, Benjamin J. Raphael
2013-03-29

Cancer genome landscapes

Bert Vogelstein, Kenneth W Kinzler, Victor Velculescu, Luis Alberto Diaz Jr, Nickolas Papadopoulos, Shibin Zhou
2013-02-07

Linking proteomic and transcriptional data through the interactome and epigenome reveals a map of oncogene-induced signaling

Adam Labadorf, Ernest Fraenkel, Douglas A. Lauffenburger
2013-02-01

Simultaneous reconstruction of multiple signaling pathways via the prize-collecting steiner forest problem

Andrea Pagnani, Nurcan Tuncbag, Alfredo Braunstein, Riccardo Zecchina, Ernest Fraenkel
2013-04-02

The scientific drunk and the lamppost: massive sequencing efforts in cancer discovery and treatment.
2013-02-06

iPoint: an integer programming based algorithm for inferring protein subnetworks

Roded Sharan
2012-10

Stem cell factor receptor/c-Kit: from basic science to clinical implications
2012-10-11

Linking the signaling cascades and dynamic regulatory networks controlling stress responses

Ziv Bar-Joseph, Anthony Gitter, Naama Barkai
2012-11-01

SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets
2012-10-04

Comprehensive molecular portraits of human breast tumours

Hai Hu
2012-04-24

Adjuvant treatment of GIST: patient selection and treatment strategies
2012-01-01

Discovery of mutated subnetworks associated with clinical data in cancer

Eli Upfal, Benjamin J. Raphael
2012-08-13

Performance of a cavity-method-based algorithm for the prize-collecting Steiner tree problem on graphs.

Alfredo Braunstein, Indaco Biazzo, Riccardo Zecchina
2012-09-14

Efficient methods for identifying mutated driver pathways in cancer
2011-09-09

Mutual exclusivity analysis identifies oncogenic network modules

Chris Sander, Giovanni Ciriello, Nikolaus Schultz
2011-03

Identifying causal genes and dysregulated pathways in complex diseases

Teresa M. Przytycka, Stefan Wuchty
2011-01

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

Peer Bork, Michael Kuhn, Damian Szklarczyk, Christian von Mering, Lars Juhl Jensen, Tobias Doerks, Pablo Minguez, Jean Muller, Milan Simonovic, Andrea Franceschini
2011-03-01

Algorithms for detecting significantly mutated pathways in cancer.

Eli Upfal, Benjamin J. Raphael
2010-12-27

Finding undetected protein associations in cell signaling by belief propagation

Alfredo Braunstein, Riccardo Zecchina
2010-12-02

An integrated approach to uncover drivers of cancer

Uri David Akavia, Helen C Causton, Dana Pe'er, Levi A Garraway
2010-02-12

Automated network analysis identifies core pathways in glioblastoma

Chris Sander, Emek Demir, Nikolaus Schultz
2010-03-04

Smad2 and Smad3 have opposing roles in breast cancer bone metastasis by differentially affecting tumor angiogenesis
2009-08-20

When mutants gain new powers: news from the mutant p53 field

Ran Brosh, Varda Rotter
2009-01

PID: the Pathway Interaction Database
2008-11-06

Human Protein Reference Database--2009 update

Shivakumar Keerthikumar, Suresh Mathivanan, Manoj K Kashyap, Manoj Kumar Kashyap, Deepthi Telikicherla, Richard Kumaran Kandasamy, Sujatha Mohan, Abhilash K Venugopal, Renu Goel, Lavanya Balakrishnan, T S Keshava Prasad, Arivusudar Marimuthu
2005-07-01

Rho GDP dissociation inhibitor protects cancer cells against drug-induced apoptosis

Marie-Claire Dagher
2004-01-01

Physical network models.

Tommi S. Jaakkola, Trey Ideker
2002-10-01

Science's signal transduction knowledge environment: the connections maps database

Nancy R Gough
2001-05-03

Lethality and centrality in protein networks

Albert-László Barabási

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