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Impulse control: temporal dynamics in gene transcription

author

Aviv Regev

1971 -

published in: Cell

date of publication: 2011-03-01

language: English

main subject: temporal dynamics

Cites articles 100

Date

Title

Authors

2010-12-01

Emerging properties of animal gene regulatory networks

Eric H. Davidson
2010-08-01

Microfluidic approaches for systems and synthetic biology

Frank Baganz
2010-08-13

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments

Seth Berger, Avi Ma'ayan, Alexander Lachmann
2010-06-28

Biological role of noise encoded in a genetic network motif
2010-07-01

Basal dynamics of p53 reveal transcriptionally attenuated pulses in cycling cells

Alexander Loewer, Eric Batchelor
2010-06-07

Population robustness arising from cellular heterogeneity

Pawel Paszek, David Spiller, David A Rand, Michael White, Sheila Ryan, Claire V Harper, Louise Ashall, Kate Sillitoe
2010-05-01

Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones
2010-01-01

The genetic landscape of a cell

Anne-Claude Gingras, Guri Giaever, Corey Nislow, Iain M Wallace, Carolyn S Sevier, Balázs Papp, Gary D. Bader, Frederick P. Roth, Sara Mostafavi, Olga Troyanskaya, Michael Brudno, Quaid D Morris, Charles Boone, Anastasia Baryshnikova, Jadine Paw, Michael Costanzo, Judice L Y Koh, Robert P St Onge, Sondra Bahr
2010-06-27

Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing

Tomasz Lipniacki, Jacob Joseph Hughey, Stephen Quake
2010-04-06

Optimizing information flow in small genetic networks. II. Feed-forward interactions

Gasper Tkacik, William Bialek
2009-12-24

A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection

Aviv Regev, Nir Hacohen, David E Root, Irit Gat-Viks, Bennett O V Shum, Sagi D Shapira
2009-12-01

The incoherent feedforward loop can provide fold-change detection in gene regulation

Lea Goentoro, Uri Alon
2009-12-04

Transient genotype-by-environment interactions following environmental shock provide a source of expression variation for essential genes
2009-11-11

Network design principles from the sea urchin embryo

Eric H. Davidson
2009-11-01

Combinatorial binding predicts spatio-temporal cis-regulatory activity

Charles Girardot, Robert P Zinzen, Julien Gagneur, Eileen E. M. Furlong
2009-11-13

An epigenetic switch involving NF-kappaB, Lin28, Let-7 MicroRNA, and IL6 links inflammation to cell transformation
2009-09-01

Transcription dynamics

Gordon L. Hager, James G McNally, Tom Misteli
2009-09-09

Systems biology of stem cell fate and cellular reprogramming

Ben D MacArthur, Avi Ma'ayan
2009-10-09

Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses

Aviv Regev, Nir Hacohen, Ana P. Leite, Tal Shay, John L. Rinn, Manuel Garber, Mitchell Guttman, Amir Giladi, David E Root, Alon Goren, Bradley Bernstein, Or zuk, Nicolas Chevrier, Thomas Eisenhaure, Moran N Cabili
2009-08-31

Specialized or flexible feed-forward loop motifs: a question of topology

Stefanie Widder, Richard V. Solé
2009-07-01

Transcriptional regulatory circuits: predicting numbers from alphabets

Aviv Regev, Tal Shay
2009-08-01

Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry

John Dick
2009-01-01

Quantitative time-lapse fluorescence microscopy in single cells

Alexander van Oudenaarden
2009-05-14

Diversity and complexity in DNA recognition by transcription factors

Esther T Chan, Quaid D Morris, Martha L Bulyk
2009-04-19

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

Ole Winther, Mihaela Zavolan, John Quackenbush, Sarah Teichmann, Anders Krogh, Sanne Nygaard, Aleksandar Radovanovic, Takahiro Suzuki, Alistair M Chalk, Andreas Lennartsson, David Fredman, Pär G Engström, Mandeep Kaur, Susanne Heinzel, Nicholas Matigian, Sebastian Schmeier, Anders Jacobsen, Eivind Valen, Altuna Akalin, Cas Simons, Ko Fujimori, Martin S. Taylor, Colin A. Semple, Oliver Hofmann, Charles Plessy, Carsten O Daub, Shintaro Katayama, Christian Schönbach, Nicolas Bertin, Albin Sandelin, Rohan D. Teasdale, Kate Schroder, Timo Lassmann, Hideya Kawaji, Erik van Nimwegen, Christine A Wells, Nicole Cloonan, Boris Lenhard, Matthew J. Sweet, Nikolai Petrovsky, Sean Grimmond, Winston Hide, David A Hume, Piero Carninci, John S. Mattick, Vladimir B. Bajic, Timothy L. Bailey, Magbubah Essack, Takashi Gojobori, Yoshinari Ando, Lukasz B Huminiecki, Jessica C Mar, Katharine M Irvine, Denis C Bauer, Timothy Ravasi, Yoshihide Hayashizaki, Katsuhiko Shirahige, Kazuho Ikeo, Jesper Tegnér, Julian Gough, Michael Hörnquist, Mika Gustafsson, Johan L M Bjorkegren, Hideo Matsuda, Yasushi Okazaki, Toshitsugu Okayama, Geoffrey J Faulkner, Harukazu Suzuki, Michael Rehli, Yuki Hasegawa, Alistair Forrest, FANTOM Consortium, Michiel Jl de Hoon, Marina Lizio, Jessica Severin, Takahiro Arakawa, Piotr J Balwierz, Anthony G Beckhouse, Frank Brombacher, Shiro Fukuda, Mutsumi Kanamori-Katayama, Tsugumi Kawashima, Miki Kojima, Atsutaka Kubosaki, Mitsuyoshi Murata, Yutaka Nakachi, Noriko Ninomiya, Hiromi Nishiyori, Shohei Noma, Orlando, Valerio, Jean-Christophe Simon, Masanori Suzuki, Michihira Tagami, Masaaki Furuno, Ariel E Schwartz, Kayoko Murakami, Kengo Imamura, Chikatoshi Kai, Ryoko Ishihara, Adéle Kruger, Christopher A Maher, Yasuhiro Tomaru, Joe Chiba, Lynn Fink, Ryuichiro Kimura, Yasumasa Kimura, Shinji Kondo, Norihiro Maeda, Rintaro Saito, Ryan J Taft, Yoichi Takenaka, Claes Wahlestedt, Kazunori Waki, Andrew L Waterhouse, Kazumi Yamaguchi, Chika Kawazu, Mikhail Pachkov, Hisashi Miura
2009-05-01

Using movies to analyse gene circuit dynamics in single cells

James C.W. Locke
2009-04-01

Pulsatile stimulation determines timing and specificity of NF-kappaB-dependent transcription

Douglas Kell, David E Nelson, Pawel Paszek, David Spiller, David A Rand, Michael White, Sheila Ryan, Claire V Harper, Violaine SEE, Louise Ashall, Kate Sillitoe, John Unitt
2009-02-01

Timing of gene expression responses to environmental changes

Daphne Koller, Gal Chechik
2009-01-16

Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells

Yuka Kanno, Chongzhi Zang, Jinfang Zhu, Lai Wei
2009-12-01

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis

Jay Shendure, Dana Pe'er
2009-05-18

Incorporating nucleosomes into thermodynamic models of transcription regulation

Eran Segal
2009-04-28

Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level

Alexander W Bruce, Paul Flicek, Christof Koch, Ian Dunham, David Vetrie, Andrés J López-Contreras

Article - wd:Q37854175

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