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Advances in plant genome sequencing

author

John P Hamilton

published in: The Plant Journal

date of publication: 2012-04-01

main subject: whole genome sequencing

Cites articles 93

Date

Title

Authors

2011-05-29

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

Jeffrey L. Bennetzen
2011-08-30

CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing

Samuel V Angiuoli
2011-03-23

Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis

Andrew J. Millar, Mikael Johansson, Peter D Gould, Anthony J Hall, Neil Hall
2011-05-01

Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis.

Célia Baroux, Thomas Lenormand, Philip Rosenstiel, Daniel Grimanelli, Ueli Grossniklaus, Stefan Grob, Daphné Autran
2011-07-18

Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata)

Richard Cronn
2011-05-20

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

Amy Litt, Susan Lucas, Jeremy Schmutz, Asaf Salamov, Erika Lindquist, Uffe Hellsten, Gerard Manning, Michael Dacre, Andreas Zimmer, Masaki Ishikawa, Jeremy Debarry, Michael J Prigge, Minoru Kubo, Milos Tanurdzic, Jing-Ke Weng, Bent Larsen Petersen, Todd P Michael, Yuji Hiwatashi, Jesper Harholt, Eugene V. Shakirov, Peter Ulvskov, Clint Chapple, Michael Gribskov, David Robert Nelson, Ingo Dreyer, Paul G. Wolf, Mitsuyasu Hasebe, Daniel S. Rokhsar, John L. Bowman, Igor V. Grigoriev, Wolf-Bernd Frommer, Henrik V. Scheller, Lydia Gramzow, Iben Sørensen, Eric Lyons, Bernd Müller-Röber, Jeffrey L. Bennetzen, Harris Shapiro, Claude W dePamphilis, Stefan A Rensing, Günter Theissen, Robert P Otillar, Diego Mauricio Riaño-Pachón, Therese Mitros, Tomomichi Fujita, Naoko T. Onodera, Marek Eliáš, Kenneth G Karol, Yoshikatsu Sato, Richard Olmstead
2011-08-28

The genome of the mesopolyploid crop species Brassica rapa

Jacqueline Batley, Junyi Wang, Julie Poulain, Binghang Liu, Jérémy Just, Silong Sun, Meixia Zhao, Alice Hayward, Hui Guo, Yupeng Wang, Haibao Tang, Guusje Bonnema, Gavin C. Conant, Joseph Christopher Pires, Ian Bancroft, Graham J. King, David Edwards, Bernd Weisshaar, Jun Wang, Matthew G Links, Sanwen Huang, Michael Freeling, Ruiqiang Li, Isobel A P Parkin, Jinling Meng, Shifeng Cheng, Jeong-Hwan Mun, Soo Jin Kwon, Su Ryun Choi, Nirala Ramchiary, Nizar Drou, Eleni Soumpourou, Martin Trick, Beom-Seok Park, Shengyi Liu, Boulos Chalhoub, ChuShin Koh, Gilles Lassalle, Harry Belcram, Huizhe Jin, Jiumeng Min, Shunmou Huang, Andrew H Paterson
2011-08-28

Whole-genome sequencing of multiple Arabidopsis thaliana populations.

Stephan Ossowski, Torsten Günther, Oliver Stegle, Christoph Lippert, Karsten Borgwardt, Detlef Weigel, Carlos Alonso-Blanco, Daniel Koenig
2011-09

The genome of the extremophile crucifer Thellungiella parvula

Maheshi Dassanayake, Dong-Ha Oh, Jian-Kang Zhu, Dae-Jin Yun, Ray Bressan
2011-07-13

Transcriptomic analysis of grain amaranth (Amaranthus hypochondriacus) using 454 pyrosequencing: comparison with A. tuberculatus, expression profiling in stems and in response to biotic and abiotic stress

Luis Rafael Herrera Estrella, Hamlet Avilés Arnaut, Julio A Massange-Sanchez, Norma Martínez
2011-05-04

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

Robert J Elshire, Jesse Poland, Edward Buckler
2011

The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencing
2011-05

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

Detlef Weigel, Jeremy Schmutz, Jane Grimwood, Yves Van de Peer, Xi Wang, Stephan Ossowski, Korbinian Schneeberger, Ya-Long Guo, Noah Fahlgren, James C. Carrington, Igor V. Grigoriev, Jan-Fang Cheng, Brandon S Gaut, Manuel Spannagl, Heidrun Gundlach, Klaus Mayer, Magnus Nordborg, Asaf Salamov, Georg Haberer
2011-02-01

Sequence-based physical mapping of complex genomes by whole genome profiling
2011-07-10

Genome sequence and analysis of the tuber crop potato

D Mu, Jun Wang, Gisella Orjeda, Frank Guzmán, Olga Ponce, Diana Martinez, Nikolai V. Ravin, Alexey Beletsky, Andrey V. Mardanov, Dan Bolser, David Martin, Robert Gromadka, Paweł Szczęsny, Sanwen Huang, Giovanni Giuliano, Marco Pietrella, Gaetano Perrotta, Sergio E Feingold, Luis A. Diambra, Brett R. Whitty, Sanjeev Kumar Sharma, David F Marshall, Dan Milbourne, Jeanne M. E. Jacobs, Marina Iovene, Christian Bachem, Herman J van Eck, Włodzimierz Zagórski, Richard G F Visser, Dean DellaPenna, Roeland C H J van Ham, Konstantin Skryabin, Ruiqiang Li
2011-07-27

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

Jakob Frimodt-Møller, Andreas Munk Petersen, Flemming Scheutz, Karen A. Krogfelt, James P Nataro, Nadia Boisen, Robert Sebra, Andrew Kasarskis, David R Rank, Eric E Schadt, Matthew Waldor
2011-07-20

An integrated semiconductor device enabling non-optical genome sequencing

Mohammad Alanjary, Kevin McKernan
2011-02

The genome of woodland strawberry (Fragaria vesca)

Mark Borodovsky, Keithanne Mockaitis, Hao Wang, Wenqin Wang, Jean-Marc Celton, Lee Meisel, Scott A. Givan, Todd P Michael, Herman Silva, Amparo Monfort, Joao Carlos Setubal, Roberto Viola, Roger P. Hellens, Andrew C. Allan, Steven Salzberg, Jasper Rees, Sushma Naithani, Alan Christoffels, Janet P Slovin, Tia-Lynn Ashman, Jeffrey L. Bennetzen, Pankaj Jaiswal, Todd C Mockler, Henry D Priest, Pere Arús, Barry Flinn, Riccardo Velasco, Kevin Folta, Allan W Dickerman, Asaph Aharoni, Clive W. Evans, Arthur L. Delcher, Chinnappa D Kodira, Ross N Crowhurst, Michela Troggio
2011-06-15

Transcriptome analysis of sarracenia, an insectivorous plant
2011-07-05

An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis

Iain W Wilson
2011-10-10

Comparative deep transcriptional profiling of four developing oilseeds

Jacob K Jensen, Markus Pauly
2011-11-06

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

Jun Wang, Jessica A Schlueter, Yupeng Li, Todd P Michael, Trushar Shah, Charles Spillane, Rajeev Kumar Varshney, Shiaw-Pyng Yang, Yang Huanming, Hari D Upadhyaya
2011-07-28

The genome sequence of the North-European cucumber (Cucumis sativus L.) unravels evolutionary adaptation mechanisms in plants

Stefan Malepszy
2011

Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes
2011-12-22

The Medicago genome provides insight into the evolution of rhizobial symbioses

Jean Weissenbach, Ton Bisseling, Jean Dénarié, Patrick Wincker, Julie Poulain, Arnaud Couloux, Claude Scarpelli, Valérie Barbe, Yves Van de Peer, Francis Quétier, Béatrice Ségurens, Sylvie Samain, Ghislaine Magdelenat, Nathalie Choisne, Erika Sallet, Vivek Krishnakumar, Lieven Sterck, Haibao Tang, Jeremy D. Murray, Stephane Rombauts, Jérôme Gouzy, Blake Meyers, Hélène Bergès, Sebastian Proost, Michael Udvardi, Heiko Schoof, Kathrin Klee, Céline Noirot, Pamela J. Green, Manuel Spannagl, Heidrun Gundlach, Frédéric Debellé, Arnaud Bellec, Klaus Mayer, Arvind K. Bharti, Jeff J. Doyle, Sean J. Humphray, Stéphanie Fouteau
2010-12-21

Galaxy CloudMan: delivering cloud compute clusters

Anton Nekrutenko, Brad Chapman, James Taylor, Nate Coraor, Enis Afgan
2010-12-26

The genome of Theobroma cacao

Julie Poulain, Xavier Argout, Jean-Marc Aury, Gaetan Droc, Jérôme Gouzy, Cristian Chaparro, Michael Abrouk, Olivier Fouet, Manuel Ruiz, Francois Sabot, Erika Sallet, Anne Diévart, Christopher Viot, Valentin Guignon, Mickael Bourge, Karina P. Gramacho, Rod A. Wing, W. Richard McCombie, Francis Quétier, Patrick Wincker, Florent Murat, Aurélie Bérard, Stephan C Schuster, Wolfgang Golser, Melissa Kramer, Jetty Siva S Ammiraju, Olivier Panaud, Ange-Marie Risterucci, Angélique D’Hont, Ronan Rivallan
2010-09

Draft genome sequence of the oilseed species Ricinus communis

Daniela Puiu, Jacques Ravel, Jonathan Crabtree, Jennifer R Wortman, Melaku Gedil, Hernan Lorenzi, Claire M. Fraser
2010-02-11

Genome sequencing and analysis of the model grass Brachypodium distachyon

Joachim Messing, James Thomson, Pamela Ronald, Dirk Inzé, Susan Lucas, Jeremy Schmutz, Erika Lindquist, Jane Grimwood, Hope Tice, Cheng Sun, James Schnable, Jan P. Buchmann, Alper Yilmaz, Jesper Harholt, Thomas Rattei, Todd P Michael, Ivan Baxter, Arp Schnittger, Thomas Brutnell, Xiaohan Yang, Peter Ulvskov, Noah Fahlgren, Hikmet Budak, Erich Grotewold, Klaus Mayer, Henrik V. Scheller, Jeff H. Chang, Kerrie Barry, Liucun Zhu, Michael Abrouk, Turgay Unver, Scott C Rowe, Patrick S Schnable, Gerald A Tuskan, Michael Bevan, Jan Dvorak, Manuel Spannagl, Florent Murat, Heidrun Gundlach, Laura E. Bartley, Frank M You, Samuel P Hazen, Lukas A Mueller, James C. Carrington, Therese Mitros, Peijian Cao, Boulos Chalhoub, Kathleen Lail, Georg Haberer, Ellen J. Pritham, Dan Rokhsar, Jaakko Tanskanen, Melanie Febrer, Todd C Mockler, Ludmila Tyler, Scott A. Givan, William Brad Barbazuk, Jinsheng Lai, David F Garvin, Richard Sibout, John C Sedbrook, Robert Hasterok
2010-12-03

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

Soon-Chun Jeong, Jong Bhak, Ik-Young Choi, Yong Seok Lee
2010-10-24

Genome-wide patterns of genetic variation among elite maize inbred lines

Jun Wang, Yang Huanming, Xiuqing Zhang, Patrick S Schnable
2010-08-11

Cloud-scale RNA-sequencing differential expression analysis with Myrna

Kasper D. Hansen, Jeffrey T. Leek, Ben Langmead

Article - wd:Q37997072

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