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Fast and accurate HLA typing from short-read next-generation sequence data with xHLA.

autor

Craig Venter

1946 -

Tao Long

Amalio Telenti

Richard H. Scheuermann

Stephen Spellman

Cynthia Vierra-Green

publicat în: Proceedings of the National Academy of Sciences

Data de publicare: 2017-07-03

Limbă: limba engleză

Citează articole 23

Dată

Title

Autori

2016-10-28

High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs

Alexander J Mentzer, Zamin Iqbal, Pierre-Antoine Gourraud, Alexander Dilthey
2016-10-18

Deep sequencing of 10,000 human genomes

Amalio Telenti, Craig Venter, Julia di Iulio
2016-01-27

The IPD-IMGT/HLA Database - New developments in reporting HLA variation

James Robinson, James D Hayhurst, Steven G. E. Marsh
2015-06

Improved genome inference in the MHC using a population reference graph

Zamin Iqbal, Alexander Dilthey
2015-01-21

HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data

Jun Yasuda
2014-11-20

Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations

Andrew Jones
2014-11-17

Fast and sensitive protein alignment using DIAMOND
2014-08-20

OptiType: precision HLA typing from next-generation sequencing data

Oliver Kohlbacher
2014-07-02

HLA diversity in the 1000 genomes dataset

Martin Maiers, Pierre-Antoine Gourraud, John D. Rioux, Pouya Khankhanian, Jorge R. Oksenberg, Stephen L. Hauser, Nezih Cereb
2013-12-18

CrossMap: a versatile tool for coordinate conversion between genome assemblies

Zhifu Sun
2013-06-08

ATHLATES: accurate typing of human leukocyte antigen through exome sequencing

Michael C. Zody, Robi D Mitra
2013-06-04

Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms.
2013-01

The IMGT/HLA database

Hamish McWilliam, Rodrigo López, Steven G. E. Marsh
2012-12-10

Derivation of HLA types from shotgun sequence datasets

Robert A. Holt
2010-01-15

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li, Richard M. Durbin
2010-10-25

The conundrum of HLA-DRB1*14:01/*14:54 and HLA-DRB3*02:01/*02:02 mismatches in unrelated hematopoietic SCT

Annamaria Pasi, Carlo Carcassi, Berardino Porfirio, Alberto Bosi
2009-01-09

The HLA genomic loci map: expression, interaction, diversity and disease
2008-11-13

In chronic condition: experiences of patients with complex health care needs, in eight countries, 2008.
2008-06-20

Advances in the selection of HLA-compatible donors: refinements in HLA typing and matching over the first 20 years of the National Marrow Donor Program Registry

Martin Maiers, Stephen Spellman, Carolyn Hurley, Michelle Setterholm, Marcelo A. Fernández-Viña, Harriet J Noreen, Machteld Oudshoorn, Effie W Petersdorf, Robert J Hartzman
2007-11-01

The HLA Region and Autoimmune Disease: Associations and Mechanisms of Action
2005-06-01

Pathogen-driven selection and worldwide HLA class I diversity

Vanina Guernier, François Balloux, Jean-Francois Guégan
2004-08-19

MUSCLE: a multiple sequence alignment method with reduced time and space complexity
2002-06-01

The clinical significance of human leukocyte antigen (HLA) allele compatibility in patients receiving a marrow transplant from serologically HLA-A, HLA-B, and HLA-DR matched unrelated donors

Nobuyuki Hamajima, Shigetaka Asano

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