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DynOmics: dynamics of structural proteome and beyond

author

Ivet Bahar

1958 -

published in: Nucleic Acids Research

date of publication: 2017-05-03

language: English

Cites articles 37

Date

Title

Authors

2016-02-19

Controlling Allosteric Networks in Proteins

Nikolay V. Dokholyan
2016-10-10

Protein Dynamics and Contact Topology Reveal Protein-DNA Binding Orientation.
2015-11-17

iGNM 2.0: the Gaussian network model database for biomolecular structural dynamics

Ivet Bahar, Lee-Wei Yang
2015-08-06

Adaptability of protein structures to enable functional interactions and evolutionary implications

Ivet Bahar, Türkan Haliloğlu
2015-07-02

Structure-Encoded Global Motions and Their Role in Mediating Protein-Substrate Interactions

She Zhang, Ivet Bahar
2015-04-16

ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability

Rafael J. Najmanovich
2015-01-06

The anisotropic network model web server at 2015 (ANM 2.0).

Ivet Bahar
2014-09-01

Ligand-induced protein responses and mechanical signal propagation described by linear response theories
2014-08-14

Molecular binding sites are located near the interface of intrinsic dynamics domains (IDDs)

Shun Sakuraba
2014-07-09

Allosteric regulation of γ-secretase activity by a phenylimidazole-type γ-secretase modulator

Takehiro Shinoda, Satoshi Yokoshima, Shigeyuki Yokoyama, Taisuke Tomita
2014-05-21

Evol and ProDy for bridging protein sequence evolution and structural dynamics

Wenzhi Mao, Timothy R. Lezon
2014-05-15

ATPase subdomain IA is a mediator of interdomain allostery in Hsp70 molecular chaperones

Ivet Bahar
2014-04-25

iMODS: internal coordinates normal mode analysis server

Enrique S Quintana-Ortí, Pablo Chacón
2013-03-14

Normal mode analysis based on an elastic network model for biomolecules in the Protein Data Bank, which uses dihedral angles as independent variables
2012-06-04

KOSMOS: a universal morph server for nucleic acids, proteins and their complexes

Sangjae Seo
2012-03-20

Constraints imposed by the membrane selectively guide the alternating access dynamics of the glutamate transporter GltPh

Ivet Bahar
2011-06-28

MAVENs: motion analysis and visualization of elastic networks and structural ensembles

Robert L Jernigan, Andrzej Kloczkowski
2011-04-01

Models with energy penalty on interresidue rotation address insufficiencies of conventional elastic network models
2011-08-27

iMod: multipurpose normal mode analysis in internal coordinates.

Pablo Chacón
2010-01-01

Global dynamics of proteins: bridging between structure and function

Ivet Bahar
2010-03-01

Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins

Ivet Bahar
2009-10-23

Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding protein

Canan Atilgan
2009-01-15

Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics

Ivet Bahar
2008-10-29

The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures

Nir Ben-Tal
2008-03

HingeProt: automated prediction of hinges in protein structures

Ruth Nussinov, Dina Schneidman-Duhovny, Haim Wolfson, Türkan Haliloğlu
2007-09-01

Signal propagation in proteins and relation to equilibrium fluctuations

Ivet Bahar
2007-07-01

Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models.
2006-01-01

A New Method for Coarse-Grained Elastic Normal-Mode Analysis
2006-07-01

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis

Erik Lindahl, Patrice Koehl
2005-06

Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes

Ivet Bahar
2005-03-11

WEBnm@: a web application for normal mode analyses of proteins

Nathalie Reuter
2005-11-02

Allostery in a coarse-grained model of protein dynamics

Michael E Wall

Article - wd:Q38804141

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