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Permanganate/S1 Nuclease Footprinting Reveals Non-B DNA Structures with Regulatory Potential across a Mammalian Genome

author

Teresa M. Przytycka

1958 -

Damian Wojtowicz

Laura Baranello

Kyong-Rim Kieffer-Kwon

Steevenson Nelson

Wolfgang Resch

David Levens

published in: Cell Systems

date of publication: 2017-02-17

language: English

Cites articles 108

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Title

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2016-04-01

RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription

Laura Baranello, Damian Wojtowicz, Kelli M Wilson, Craig J. Thomas, Teresa M. Przytycka, David Levens
2016-04-29

Dynamic binding of replication protein a is required for DNA repair

Shyamal Subramanyam
2016-04-15

Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences

Albino Bacolla, David N. Cooper, John A. Tainer, Karen M Vasquez
2016-05-11

Near-atomic resolution visualization of human transcription promoter opening

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2015-11-13

Mutagenic consequences of a single G-quadruplex demonstrate mitotic inheritance of DNA replication fork barriers

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2015-09-01

Genomics. where the G-quadruplexes are
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High-throughput sequencing of DNA G-quadruplex structures in the human genome.

Vicki S Chambers, Marco Di Antonio, Shankar Balasubramanian
2015-11-02

Trypan Blue Exclusion Test of Cell Viability
2015-09-17

Guanine quadruplex structures localize to heterochromatin

Eugène Berezikov, Stijn Mouton, Jan Postberg, Hans-Joachim Lipps
2014-03-24

Involvement of G-quadruplex structures in regulation of human RET gene expression by small molecules in human medullary thyroid carcinoma TT cells
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HRAS is silenced by two neighboring G-quadruplexes and activated by MAZ, a zinc-finger transcription factor with DNA unfolding property

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Fiona Cunningham, Konstantinos Billis, Denise Carvalho Silva, Guy Coates, Laurent Gil, Thibaut Hourlier, Sarah E. Hunt, Sophie H Janacek, Thomas Juettemann, Andreas K Kähäri, Stephen Keenan, Fergal J Martin, Thomas Maurel, William M McLaren, Daniel N Murphy, Rishi Nag, Mateus Patricio, Emily Pritchard, Dan Sheppard, Kieron Taylor, Anja Thormann, Alessandro Vullo, Steven P Wilder, Bronwen Aken, Ewan Birney, Matthieu Muffato, Magali Ruffier, Stephen Trevanion, Andrew D Yates, Daniel R Zerbino, Paul Flicek, Jennifer Harrow, Carlos García Girón, M Ridwan Amode, Harpreet Singh Riat, Daniel Barrell, Miguel Pignatelli, Giulietta Spudich, Bert Overduin, Rhoda Kinsella
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DNA topology and transcription

Laura Baranello, David Levens
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Replication-induced supercoiling: a neglected DNA transaction regulator?

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2014-05-09

Novel interaction of the Z-DNA binding domain of human ADAR1 with the oncogenic c-Myc promoter G-quadruplex
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The dynamic character of the BCL2 promoter i-motif provides a mechanism for modulation of gene expression by compounds that bind selectively to the alternative DNA hairpin structure

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Burgeoning evidence indicates that microRNAs were initially formed from transposable element sequences

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2014-11-30

Induction of Ras by SAF-1/MAZ through a feed-forward loop promotes angiogenesis in breast cancer
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Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation

Teresa M. Przytycka, Alejandro A Schäffer, David Levens
2014-10-04

SIST: stress-induced structural transitions in superhelical DNA.
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Inhibition of cancer cell migration and invasion through suppressing the Wnt1-mediating signal pathway by G-quadruplex structure stabilizers

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DNA torsion as a feedback mediator of transcription and chromatin dynamics

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DNA sequences that interfere with transcription: implications for genome function and stability

Sergei Mirkin
2013-01-30

The G-quadruplex ligand, SYUIQ-FM05, targets proto-oncogene c-kit transcription and induces apoptosis in K562 cells
2013-01-01

G-quadruplex structures are stable and detectable in human genomic DNA.

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2013-03-01

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Eran Segal
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Cancer genome landscapes

Bert Vogelstein, Kenneth W Kinzler, Victor Velculescu, Luis Alberto Diaz Jr, Nickolas Papadopoulos, Shibin Zhou
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Targeting non-B-form DNA in living cells
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Transcription-dependent dynamic supercoiling is a short-range genomic force

Laura Baranello, Teresa M. Przytycka, David Levens
2013-11

Methods to detect replication-dependent and replication-independent DNA structure-induced genetic instability
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Quantitative visualization of DNA G-quadruplex structures in human cells

Giulia Biffi, David Tannahill, Shankar Balasubramanian

Article - wd:Q38941956

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