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Immune epitope database analysis resource (IEDB-AR).

author

Morten Nielsen

Philip Bourne

Julia Ponomarenko

Soren Buus

Alessandro Sette

Bjoern Peters

Ole Lund

Huynh-Hoa Bui

Claus Lundegaard

Jason A Greenbaum

Yohan Kim

Pernille Haste Andersen

Zhanyang Zhu

published in: Nucleic Acids Research

date of publication: 2008-05-31

language: English

main subject: database

Cites articles 28

Date

Title

Authors

2008-03-16

Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research

Vladimir Brusic
2008-01

In SilicoTools for Predicting Peptides Binding to HLA-Class II Molecules: More Confusion than Conclusion
2007-10-31

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

Morten Nielsen, Soren Buus, Ole Lund, Claus Lundegaard, Kasper Lamberth
2007-09-26

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines

Alessandro Sette, Huynh-Hoa Bui, John Sidney, Nicolas Fusseder
2007-07-04

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

Morten Nielsen, Ole Lund, Claus Lundegaard
2007-06-01

The major horse allergen Equ c 1 contains one immunodominant region of T cell epitopes

Tuure Kinnunen, Juha Peräsaari, Marja Rytkönen-Nissinen
2007-02-21

EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB)

Philip Bourne, Julia Ponomarenko
2007-03-01

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

Avner Schlessinger, Yanay Ofran, Brendan Mumey, Martin S Zand, Jean-Luc Pellequer, James E. Crowe, Jr., Alessandro Sette, Julia Ponomarenko, Bjoern Peters, Ole Lund, Huynh-Hoa Bui, Jason A Greenbaum, Clemencia Pinilla, Pernille Haste Andersen
2007-05-01

Impact of hepatitis B virus basic core promoter mutations on T cell response to an immunodominant HBx-derived epitope.

Stanislas Pol
2007-03-26

The ORION statement: guidelines for transparent reporting of outbreak reports and intervention studies of nosocomial infection

Ben S. Cooper, Graham F. Medley, Philip J Wiffen
2007-02-01

Determination of a HLA II promiscuous peptide cocktail as potential vaccine against EBV latency II malignancies

Olivier Moralès
2006-06-09

A community resource benchmarking predictions of peptide binding to MHC-I molecules

Ward Fleri, Soren Buus, Alessandro Sette, Bjoern Peters, Ole Lund, Huynh-Hoa Bui, John Sidney, Claus Lundegaard, Morten Nielsen, Kasper Lamberth
2006-04-24

Improved method for predicting linear B-cell epitopes

Ole Lund, Morten Nielsen
2006-04-01

MHC class II proteins and disease: a structural perspective

Yvonne Jones, Lars Fugger, Jack L. Strominger
2006-09-25

Prediction of residues in discontinuous B-cell epitopes using protein 3D structures

Morten Nielsen
2005-08-29

Structure of AMA1 from Plasmodium falciparum reveals a clustering of polymorphisms that surround a conserved hydrophobic pocket

Robin Fredric Anders
2005-05-31

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method

Alessandro Sette, Bjoern Peters
2005-03

The immune epitope database and analysis resource: from vision to blueprint

Philip Bourne, Alessandro Sette, Stephen Schoenberger, Ward Fleri, Julia Ponomarenko, Bjoern Peters, Ole Lund, Huynh-Hoa Bui, John Sidney, Soeren Buus, Grace Doh, Mitch Kronenberg, Ralph T. Kubo, David Nemazee, Muthu Sathiamurthy, Pamela Surko
2005-08-01

An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

Soren Buus, Søren Brunak, Morten Nielsen, Ole Lund, Claus Lundegaard, Kasper Lamberth, Mette Voldby Larsen
2005-05-03

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

Francis V. Chisari, Alessandro Sette, Bjoern Peters, David I Watkins, Huynh-Hoa Bui, John Sidney, Muthu Sathiamurthy, Kelly-Anne Purton, Bianca R. Mothe
2005-05-01

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding.

Stefan Tenzer, Hans-Georg Rammensee
2005-03-03

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

Morten Nielsen, Ole Lund, Claus Lundegaard
2004-12-02

Benchmarking B cell epitope prediction: underperformance of existing methods
2003-05

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

Søren Brunak, Morten Nielsen, Claus Lundegaard, Soren Buus, Kasper Lamberth, Peder Worning, Sanne Lise Lauemøller
2003-09-01

Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules.

Alessandro Sette, John Sidney
2000-01-01

The Protein Data Bank

Philip Bourne, Ilya Shindyalov, Helen M. Berman
1999-06

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

Maria Pia Protti, Uğur Şahin
1988-06-03

Measuring the accuracy of diagnostic systems

Article - wd:Q39786848

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